KEGG   Enhydra lutris kenyoni (northern sea otter): 111146725
Entry
111146725         CDS       T05871                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
  KO
K14401  cleavage and polyadenylation specificity factor subunit 1
Organism
elk  Enhydra lutris kenyoni (northern sea otter)
Pathway
elk03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:elk00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    111146725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:elk03021]
    111146725
   03019 Messenger RNA biogenesis [BR:elk03019]
    111146725
Transcription machinery [BR:elk03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     111146725
Messenger RNA biogenesis [BR:elk03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     111146725
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd UspB
Other DBs
NCBI-GeneID: 111146725
NCBI-ProteinID: XP_022358108
UniProt: A0A2Y9JAR2
Position
Unknown
AA seq 1443 aa
MYAVYKQAHPPTGLEFAMYCNFFSNSERNLVVAGTSQLYVYRLNRDAEAPSKNDRSTEGK
AHREHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKT
LSLHYFEEPELRDGFVQNVHAPRVRVDPDGRCAAMLIYGSRLVVLPFRRESLAEEHEGLM
GEGQRSSFLPSYIIDVRALDEKLLNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDT
CCIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYG
VALNGLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITDGMRSV
RAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEAPAGTVREADKDEPP
SKKKRVDSTVGWSGGKSAPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAA
MGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVI
APARKEQEETPKGEGAEQEPSALEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGF
ATQGPTVFAGNIGDGRYIVQVSPLGIRLLEGVSQLHFIPVDLGSPIVQCAVADPYVVIMS
AEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCVYRDVSGMFTTESRLGGARDD
LGGRSGSEAEGQGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPTPFRVE
PTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARKEEATRQ
GELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNIN
FREKKPKPSKKKAEGGGAEEGAGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGA
LRLHPMGIDGPIDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRC
TAHYVAYHVESKVYAVATSTNMPCTRIPRMTGEEKEFEAIERDDRYVHPQQEAFSIQLIS
PVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLTQGEEVTCRGRIL
IMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASEL
TGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDF
MVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGLRLLRRADFHVGAHVNTFWRTPCRGAA
EGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRA
FRLLHADRRALQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDIILDDLLETDRVT
AHF
NT seq 4332 nt   +upstreamnt  +downstreamnt
atgtacgccgtgtacaagcaggcgcacccgcccaccggcctggagttcgccatgtactgc
aacttcttcagcaacagcgagcgcaacctcgtggtggccggcacctcgcagctctacgtg
taccgcctcaaccgcgacgccgaggcaccaagcaagaatgacaggagcacagagggaaag
gcccaccgggaacaccgggagaagctggagctggtggcctccttctccttcttcggcaac
gtcatgtccatggccagcgtgcagctagcgggcgccaagcgggacgccctgctcctgagc
tttaaggacgccaagctctcggtggtggagtatgacccgggcacccatgacttgaagacc
ctgtctctgcactactttgaggagcctgagctgcgggatgggtttgtgcagaacgtgcac
gcgccgcgggtgcgggtggaccccgacgggcgctgtgccgccatgcttatctacggctcg
cgcctggtggtgctgcccttccgcagggagagcctggccgaggagcacgaggggctgatg
ggggaggggcagaggtccagcttcctgcccagctacatcattgacgtgcgggccctggac
gagaagctgctcaacatcgtggacctgcagttcctgcacggctactacgagcccacgctg
ctcatcctcttcgagcccaaccagacctggccggggcgggtggctgtgcggcaggacacg
tgctgcatcgtggccatttccctgaacatcacacagaaggtccacccggtcatctggtcc
ctcaccagcctgcccttcgactgcacgcaggccctcgccgtgcccaagcccataggcggg
gtggtggtcttcgcggtcaactcgctgctgtacctgaaccagagcgtccccccgtacggc
gtggctctcaacggcctcaccaccggcaccactgcctttccccttcgcacccaggagggc
gtgcggatcaccctcgactgtgcgcaggcggccttcatctcctatgacaagatggtcatc
tccctcaagggtggtgagatctacgtgctgaccctcatcaccgacggcatgcgcagcgtc
cgcgccttccactttgacaaggccgccgccagcgtgctcaccaccagcatggtcaccatg
gagcctggctacctgttcctcggctctcgcctgggcaactcgctcctcctcaagtacaca
gagaagctgcaggaggccccggccggcaccgtccgggaggccgacaaggacgagcccccc
tcgaagaagaagcgagtggactccacagtcggctggtcagggggcaagtccgcaccgcag
gacgaggtggatgagattgaagtctacggcagcgaggcccagtcgggcacacagctggcc
acttactctttcgaggtctgcgacagcatcctcaacatcggaccctgtgccaacgcggcc
atgggcgagcctgccttcctctccgaagagtttcagaacagccctgagccagatttggag
atcgtggtgtgctccggctatgggaagaatggggccctgtccgttctacagaagagcatc
cggccccaggtggtgacaacctttgaacttcctggctgctacgacatgtggacagtcatc
gctcccgcgcggaaggaacaagaggagacccccaagggggagggggcagagcaggagccc
agcgcccttgaggcagatgatgacggacggagacatgggttccttatcctgagccgggaa
gactccaccatgatcctgcagacagggcaagagatcatggagctggacaccagtggcttt
gccacacagggccccacggtcttcgctggcaacatcggggacggtcgctacattgtgcag
gtgtcgccgcttggcatccgcttgttggaaggagtgagccagctgcacttcatccctgtg
gacctgggctcgcccatcgtgcagtgcgccgtggccgacccctacgtggtcatcatgagt
gctgagggccacgtcaccatgttcctgctcaagagtgactcgtatgggggccgtcaccac
cgcctggcgctgcacaagccacccctgcaccaccagtccaaggtgatcaccctgtgcgtg
taccgagacgtcagcggcatgttcactaccgagagccgcctgggtggggcccgcgatgac
ctgggaggccgcagtggctccgaggccgaggggcagggctcggaaaccagccccaccgtg
gacgacgaggaggagatgctgtacggggactcgggctccctcttcagccccagcaaggag
gaggcccgcaggagcagccagccccctgcggaccgggaccccaccccgttccgcgtcgag
cccacccactggtgcctgctggtgcgggagaacggaaccatggagatctaccagctgcct
gactggaggctggtgttcctggtgaagaacttccccgtggggcagcgggtcctggtggac
agctccttcggtcagcccacaacgcagggcgaggcccgaaaggaggaggccacgcgccag
ggggagctgccgctcgtcaaggaggtgctgctggtggcgctggggagtcgtcagagcagg
ccctacctgctggtgcacgtggaccaggagctgctcatctacgaggccttcccccacgac
tcccagcttggccagggaaacctcaaagtccgtttcaagaaggtccctcacaacatcaac
ttccgggagaagaagccaaagccgtccaagaagaaagcggagggcggcggcgccgaggag
ggggctggggcccgtggccgtgtggcccggttccggtacttcgaggacatctatggctac
tcaggggtcttcatctgtggcccctcgcctcactggctcctggtgacgggccggggggcc
ctgcggctgcaccccatgggcatcgatggtcccattgactcctttgcccccttccacaac
gtcaactgcccccgaggcttcctgtacttcaacagacagggcgagctgaggatcagcgtc
ctgcccgcttacttgtcctacgacgccccgtggccggtcaggaagatcccactgcgctgc
acagcccactacgtggcttaccatgtggagtccaaggtctatgctgtcgccaccagcacc
aacatgccgtgcacccgcattccgcgcatgaccggcgaggagaaggagttcgaggccatc
gagagagacgaccggtacgtccacccccagcaggaggccttctccatccagctcatctcc
ccggtcagctgggaggccatccccaatgccaggatcgagctggaggagtgggagcacgtg
acctgcatgaagacggtgtcgctgcgcagtgaggagaccgtgtcgggcctcaagggctac
gtggctgctgggacctgcctcacgcaaggggaggaggtcacgtgtcgagggcggatcctg
atcatggacgtgattgaggtggtgcctgagcctggccagcccctgactaagaacaagttc
aaagtcctgtatgagaaggagcagaaggggccggtgaccgccctgtgtcactgcaacggc
cacctggtgtccgccattggccagaagattttcctgtggagcctgcgggccagcgagctg
accggcatggccttcatcgacacgcagctctacatccaccagatgatcagcgtcaagaac
ttcatcctggccgcggatgtcatgaaaagcatctcgctcctgcgctaccaggaggagagc
aagacgctgagcctcgtgtccagggacgccaagccgctggaggtgtacagtgtggacttc
atggtggacaacgcgcagctgggcttcctggtgtccgaccgagaccgcaacctcatggtg
tacatgtacctgccggaagccaaagagagcttcgggggcctgcggctgctgcggcgcgcc
gacttccacgtgggcgcccacgtcaacaccttctggaggacgccgtgccgcggggccgcg
gaggggcccagcaagaagtcggtggtgtgggagaacaagcacatcacgtggttcgccacc
ctggacggcggcatcgggctgctgctgcccatgcaggagaagacctaccgacgcctgctg
atgctgcagaacgcgctgaccaccatgctgccccaccacgccggcctcaacccccgggcc
ttccggctgctgcacgcggaccggcgcgccctgcagaacgctgtgcgcaacgtcctggac
ggtgagctgctgaaccgctacttgtacctcagcaccatggagcgcggcgagctggccaag
aagatcggcaccaccccggacatcatcctggacgacctgctggagaccgaccgtgtcacc
gcccacttctag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (9)   

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