KEGG T08185: LXD69

Flavobacterium sediminilitoris: LXD69_17255

Entry

LXD69_17255       CDS       T08185

Symbol

rlmD

Name

(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

K03215

23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]

Organism

fsd Flavobacterium sediminilitoris

Brite

KEGG Orthology (KO) [BR:fsd00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:fsd03009]
    LXD69_17255 (rlmD)
Enzymes [BR:fsd01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     LXD69_17255 (rlmD)
Ribosome biogenesis [BR:fsd03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    LXD69_17255 (rlmD)

SSDB

Motif

Pfam:

tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 MTS Cons_hypoth95 TRM5-TYW2_MTfase Methyltransf_11 TRAM Methyltransf_15 PrmA N6_N4_Mtase PCMT Methyltransf_12 UPF0020 FtsJ

Other DBs

NCBI-ProteinID:

UOX33768

Position

3761998..3763410

AA seq 470 aa
MGRKRTEKIVFENVKVLDAGAKGVSVAKAPDGKVIFIPNVVPGDVVDVQTMKKRKAYYEG
KATTIHEFSTDRVDVVCDHFGACGGCKWQNMHYDKQLFYKNQEVYNNLKRIGKIEMPEFE
PILGSEKQFFYRNKMEFGFSNSRWMTDEEIKSGKEFEHKNALGFHIPRMWDKILDIEKCH
LQQDPSNAIRNEIKEFAVANGLEFFNPRAHEGLLRTLMIRTASTGEIMVLIQFFKEDKEQ
RELLLNFLAERFPEITSLLYVINGKPNDTIYDQDIKLFKGREYILEEMEGLHFSINAKSF
YQTNSDQAYELYKITRDFAGLTGEELVYDLYTGTGTIAQFVSKQAKKVIGVEAVPEAIAD
AKENAKRNSITNCEFFVGDMKNVFNDDFIKAHGHPDVIITDPPRDGMHKDVVAQILKIAP
KKVVYVSCNSATQARDLALMDEMYKVVRVRPVDMFPQTHHVENVVLLEKR

NT seq 1413 nt +upstreamnt +downstreamnt
atgggaagaaagagaacagaaaaaatcgtattcgaaaacgtaaaagtccttgatgcagga
gcaaaaggcgtatcggtagcaaaagcacctgatggtaaggtgatttttattccaaatgta
gtacctggcgatgtggtagatgtgcaaacaatgaagaaaagaaaagcctattatgaaggg
aaggcaactactattcatgaattttcaacagatcgtgtagatgtagtttgcgatcatttt
ggtgcttgtggtggttgtaaatggcaaaacatgcactacgacaaacaattattttataaa
aatcaggaagtttataacaatctaaaaaggattggtaaaatagaaatgcccgaattcgaa
cctattttaggctcagaaaaacagtttttctatcgtaataaaatggaatttggtttctct
aattcgcgctggatgaccgatgaggaaatcaaaagcggaaaagaatttgaacataagaat
gcattaggttttcatattcctagaatgtgggataaaattttagatattgaaaaatgtcat
ttgcaacaagatccatctaatgctattcgtaatgaaataaaagaatttgcggttgctaat
ggcttagagttctttaatcctcgtgcacatgaaggtttattacgcaccttaatgattcgt
actgcttctacaggcgaaatcatggttttgattcaattctttaaagaagacaaagaacaa
agagaattactattgaattttcttgcagagcgttttcctgaaatcacttccctactctat
gtgattaatggtaagccaaatgatactatttacgatcaggatataaaactttttaaagga
agagagtatattttagaagaaatggaagggttacattttagtattaatgcaaaatcattc
tatcaaactaattctgatcaggcgtatgaattatataaaattacacgtgattttgcagga
ttaacaggtgaggaattggtttatgatttatatactggaacaggaactattgctcaattc
gtttcaaagcaagcaaaaaaagtaattggtgtagaggctgttcctgaagctattgctgat
gctaaagaaaatgctaaacgaaacagtataactaattgtgagttcttcgtgggagatatg
aaaaatgttttcaatgatgattttataaaagctcacggtcatccggatgttattattaca
gatcctccaagagatggaatgcacaaagatgtagtggctcaaattttaaaaattgctcct
aaaaaagtggtctatgtaagttgtaattcggcaacacaagcaagggatttagctttgatg
gatgaaatgtacaaagtagtacgcgtaagacctgtagatatgtttccacaaacgcatcat
gtggaaaatgttgtacttttggaaaagcgataa

All links

Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (15)   
   Pfam (15)   
All databases (16)   

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