KEGG   Halomonas sp. MS1: NF683_15740
Entry
NF683_15740       CDS       T09972                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
hams  Halomonas sp. MS1
Pathway
hams03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hams00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    NF683_15740 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hams03400]
    NF683_15740 (mfd)
Enzymes [BR:hams01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NF683_15740 (mfd)
DNA repair and recombination proteins [BR:hams03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      NF683_15740 (mfd)
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID MFD_D3 ResIII UB2H AAA_30 ERCC3_RAD25_C Glyco_tran_WecG AAA_22
Other DBs
NCBI-ProteinID: UTD54593
Position
complement(3431805..3435254)
AA seq 1149 aa
MSSFSLLEPPQPKGIRDTLYLTAPPGSATALALAQVALSAPLLVITPNTASAQRLEQDLA
FYSNVPVLPFPDWETLPYDSFSPHQDIISSRLRTLRLLQDGVRGIVLVPINTLMQRLPPV
SYIAGRVMTLKAGAKLNRETFRESLSRAGYRAVETVYEPGEYAMRGAIIDLFAMGMDEPI
RIDLFDDEIDTLRHFDPGNQRSTHKVDVIELLPAHEYSLSRSATACFREQFETLFDVDPR
QCPLYNDALKAIPSPGLEQYLPLFFDETASLFEHVTDDTRVALLPGVFEAAEQHWQSIES
RYENLGVDPTRPLLPPLRAFIPVNDVFSAIKARPRIELTKDNTQRHALAPKAQALPSLAI
NARAKQPLNELASFLDAQQATRVLFVAESRGRREALEEVLAPLKLSLPHIDSFQDFLSST
DRIAITESLVGSGLWLTEPNVAVISETELFGDVVRQSRRREKATDDNELAVRHLSELREG
APVVHQAHGVGRYLGLETLEAGGQANEFLALSYADGAKLYVPVDSLHLISRYSGADDELA
PLHRLGSDQWEKARRKAAEKIRDTAAELLDIYARREAQEGFIYDTPGDEYVRFSASFPFE
ETPDQQAAIEAVISDMISPQPMDRVVCGDVGFGKTEVAMRAAFLAVQTGRQVVVLVPTTL
LARQHFENFRDRFADTAVNISLISRFTGGKEMTQTLESIKNGQTDIVIGTHKLLSKSVEL
PKMGLLIIDEEHRFGVAQKEKLKTLRAEIDILTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFVQQRDSSVIKEALLREILRGGQVYFLHNEVKTIENAAEQIRELVPEARVAV
AHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTILIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMTRDAVKRLEAISASDDLGAGFTLASHDMEIRGAGELLG
DEQSGQMETIGYTLYMEMLDRAVKAIRAGKTPNIDAPFNTGVEISLNLPALIPDDYIHDV
QQRLVMYKRIANTQSDAELKELQVELIDRFGLLPQPLKNLIRQTRLRHRAEQLGVARIEA
GENRGRVLFNGSTQVDPLTLVTLIQKSPQHYRLDGSDTLRFEFPMETTEQRFDKVEALLT
TLNQKVAAA
NT seq 3450 nt   +upstreamnt  +downstreamnt
atgtcctctttttctctgctcgaaccgccccagcccaaagggattcgcgacacgctctac
ctaacagcgccgccgggcagtgcaactgccctggcgctggctcaggtcgcgttaagcgca
ccattattggttattacgccgaatactgccagcgcacagcgcctggaacaggatctggca
ttctatagcaatgttcccgtcctgccctttccagattgggaaacgctgccttatgacagc
ttctccccgcaccaggatattatctcgtcacgcctacgcacgctgcgcttactgcaggat
ggcgtacgcggcattgtgctggtgccaatcaatacgctgatgcagcgcttgccccccgta
tcatacatcgctgggcgcgtgatgacgctaaaagcgggcgccaaactaaatcgggaaaca
tttcgcgaatcgctatcgcgggcaggttatcgtgccgtagaaacggtctacgagcctggc
gaatacgccatgcgcggcgcaatcatcgaccttttcgccatgggtatggatgagccaatt
cgtatcgatttgtttgatgacgaaatcgatacattacgccatttcgaccctggcaatcag
cgctctacccataaagtcgatgtgattgagctactcccagctcatgagtactcactcagc
cgcagcgccactgcttgcttccgggaacagtttgaaacgctttttgatgttgatccgcgc
cagtgccctctctataacgacgcactgaaagccatcccgtccccgggcttggaacaatat
ttgccactgttcttcgacgaaaccgcttctttatttgagcacgttaccgatgacacccgt
gtagcactgctgccaggtgtattcgaagcagctgagcagcactggcagtctattgaatca
cgctacgagaatttgggtgttgacccaacacgcccccttttaccaccgcttcgcgcgttc
attcccgttaatgacgttttttcggcgatcaaagctcgcccccgaatcgaactaaccaaa
gacaacacgcaacgccatgccctggcgccgaaagcccaagcgctaccctcgctggcaatt
aacgctcgcgccaagcaaccccttaacgaactggctagctttctggatgcgcagcaagct
acgcgggtactgtttgttgccgagtcacggggacgcagagaagcgttagaagaagtgttg
gcgccgcttaaattaagcctgccccatattgatagcttccaagactttttaagcagcact
gaccgcatagccattactgaaagcttggtaggcagcggcttgtggcttaccgaaccgaat
gtcgcggtgatcagcgagaccgaactctttggcgatgtcgtgcgccagagccggcgacga
gaaaaagcgaccgacgacaacgaattggccgtgcgccatttatctgagctacgagaaggc
gcaccagttgttcaccaagcacatggcgtcggccgctacttggggttggaaacccttgaa
gctggcggtcaagctaacgaattcctggcgctttcatatgccgacggtgccaagctttat
gtcccggtcgatagcctgcatcttatttctcgctatagcggcgctgatgacgaactcgct
ccgctgcatcggttaggctcagatcagtgggaaaaggcacgccgtaaagcggctgagaaa
atccgagacactgccgctgagctactcgacatctacgcccggcgggaggctcaggaaggc
ttcatttatgatacgccgggcgatgaatacgttcgcttctctgccagcttcccatttgaa
gaaacccctgaccagcaggcagccattgaagcagttataagcgacatgatctctcctcag
ccaatggatcgcgtcgtttgtggcgatgtaggctttggcaagaccgaagtcgccatgcgt
gctgcattcctggccgttcaaaccggtcgccaagtagtggtgcttgtgcccaccacgctg
ttagcccgccagcactttgaaaacttccgcgaccgctttgccgacaccgctgtgaatatt
agtcttatttcgcgcttcacaggcggcaaggaaatgacgcaaaccttggaaagcatcaaa
aatggccaaaccgacatcgtaatcggcacccataagctgctgtctaaaagcgttgagctg
cccaaaatggggcttttaattatcgacgaagagcaccgctttggggtcgcacagaaagag
aaactcaaaacgctgcgcgccgaaatcgacattctgacgctaacggcaacaccgattccg
cgcaccttgaatatggccatgagcggtatccgagatctttcgattattgccactccaccc
gcgcggcgcttatcggtcaaaacgtttgtgcaacagcgagacagcagcgtcattaaagaa
gccctgctgcgtgaaatattacgcggcggacaagtctactttttgcacaatgaagtcaaa
acgattgaaaatgctgctgaacagattcgtgaactggtgccagaggcacgggttgctgtt
gctcacggccaattacccgagcgcagccttgagcgagtcatgtcagacttctatcatcgt
cgcttcaatgtactagtgtgctctaccattatcgaaacgggcattgacgtgcccagcgcc
aacacgattctgattgagcgcgccgataagtttggcttggcccagctacaccaactgcgt
ggccgcgttggacgcagccaccaccaagcatatgcttacctactaacaccgccccccaag
gcaatgacacgagatgccgtaaagcgcctggaagcgattagcgcctccgatgatctcggt
gctggtttcaccttagcaagtcacgacatggagatacgtggcgcaggcgagctcctgggc
gacgagcagagcggccaaatggaaaccatcggctacacgctttacatggagatgctggat
cgcgcggtgaaggctattcgtgcgggcaaaacgcctaacattgacgcccccttcaacacc
ggtgtcgagattagcctcaatttgccagcattgattccagatgactatattcacgacgta
caacagcgcctggtgatgtataaacgtatcgccaacacccagagcgacgctgaacttaag
gagctacaagtcgagcttattgatcgctttggactccttcctcagcccttgaagaacctg
atacgccagactaggcttcgccaccgcgctgaacaactaggtgtcgcgcgcattgaagcc
ggtgaaaaccgtggacgagtacttttcaacggctctacccaggtcgatccattaacactt
gtgacactcattcaaaaatcgccacagcactaccgactggatggctcagacactttacgg
tttgaattcccaatggaaactaccgaacagcgttttgataaagtcgaagctctgcttaca
acactcaatcaaaaagtagcggcggcgtga

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (12)   
   Pfam (12)   
All databases (13)   

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