KEGG   Hippocampus comes (tiger tail seahorse): 109507357
Entry
109507357         CDS       T04969                                 
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
  KO
K14315  nucleoporin NDC1
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    109507357 (ndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hcq03019]
    109507357 (ndc1)
Messenger RNA biogenesis [BR:hcq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     109507357 (ndc1)
SSDB
Motif
Pfam: Ndc1_Nup
Other DBs
NCBI-GeneID: 109507357
NCBI-ProteinID: XP_019712283
UniProt: A0A3Q2YJZ4
Position
Unknown
AA seq 669 aa
MFSADQNCWFVRKVICWRAAASIAWAVLLLPPTTAVFVILSKFSLLFPIQTLSECLSVMT
SASGILSFVLLCSVTTMVGFLIFVYYTVIPTVACSKIALLGHLLHPRHVANSLLHCFMGI
MVAWWAAVTIGGRYEMHTYPCGVEDAPPQMCLNEYHLILLLAGAFVGFSHNLFGVVHNMN
YVFFPTVQQYKYLRFKESLPLVVKCSAAQALYSIRNYILVYFFLGYIPREWICKMFNLHL
NSSTHRLDTISGLLDLTLLYHLWTSATFLLFTWYMALLLFRIFITEDYSFPIQSSFTEDV
HQCLPRVLSDPKPGILKFLALQDLALFSQHSPWRRGEVFSLSQPGGHPHNWNAISKECQS
LLADLTQRLIAYHDSVATNGRAKSLSSGSGELKSTSDSSSAISGAEDQKSPMARNVPIQS
PDCVFGSTQPRHLTAPFTPPYQDSYFSSPNLRRLATSVYQGSPWHGTVQSPHIMRRAPKL
WSTPTDSQSSGSPLLSAAPLLSPKQVADQPGLLAQFLHNRKEQVKSFLSKRVLIAYLFNK
LPEASSEALFAGSQAHIWALEGLSYLVQASFSEDHFGVVQTALPSILSTMLLLQEAVDRH
FKLPHASTKPMRTAGGMGEPAYKTLRFALRAALKTAIYRITTTFGDHLNAVHMSAEHRKR
LQLFLHYKE
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgttttctgcggaccaaaattgttggtttgtccgcaaggtgatttgctggagggctgca
gccagcatagcctgggctgtcttgttgttgccaccaaccacggcagtttttgtcatcctc
agcaaattcagtcttctcttcccaatccagactctatcagaatgtttgtccgtcatgaca
agcgccagcggcattttgtcctttgtcctgttgtgcagcgtcaccaccatggtgggcttc
ctgatctttgtatattatacggtcatccctaccgttgcctgctccaaaatcgctctgttg
ggtcacctgctgcatccgcgtcacgtggccaactccttgctccactgcttcatgggcatc
atggtggcctggtgggctgctgtcaccattgggggccgttacgagatgcacacttacccc
tgcggcgtcgaagacgctccccctcagatgtgtctgaacgagtaccatctcatcctcctg
ctggcgggagctttcgtgggcttctcccacaacctgtttggtgtcgtccacaacatgaac
tatgtgtttttccccaccgttcagcaatacaagtaccttcgttttaaggagtccttgccg
ctggtggtgaagtgcagtgctgcccaagcactttactcgatcaggaactacattctagtg
tatttcttcttgggatacatcccaagagagtggatctgtaaaatgttcaaccttcactta
aacagttccactcaccgtctggacaccatcagcgggcttctggacttgaccctgctctac
catctgtggaccagtgccacctttctactcttcacttggtacatggccttgctgctcttc
aggatttttatcacggaggactacagtttcccaatacagtcatctttcacagaggacgtg
caccagtgtcttcccagagttctgtctgacccaaagccaggaatattaaagttcctagcc
ctacaagacttggctctgttctctcagcactcgccatggcgacgtggcgaggtgttcagc
ctaagtcagccaggtggacatcctcacaactggaatgccattagcaaggagtgtcaatcg
cttctggcggacctgacccagcgactgatcgcttaccacgacagcgtggccaccaacggc
agggccaagtcgctttcgtcgggaagtggcgaactgaagtccacgtcggactcgtcttca
gcaatctctggtgcagaggatcagaagagtccaatggccagaaacgtcccgatccaaagt
ccagattgcgtcttcggcagcacgcagccaagacacttgacggcgccgttcaccccaccc
taccaggacagctacttctcctcaccgaacctgcgacgtctcgccacatccgtataccag
ggctcgccatggcatggcaccgtgcagagcccccacattatgaggagggcccccaaattg
tggtccacccccacagattcacagtctagcggcagcccactgctgtccgccgccccactg
ctcagtcccaagcaggttgccgaccaacccggtcttttggcccagttcctccacaacagg
aaagaacaggttaaaagcttcctgtccaagcgtgtgctgatcgcgtatttgttcaacaag
cttccagaagcctccagtgaagcgctctttgccggcagccaggcccacatttgggcattg
gagggactgtcctacctggttcaagcctccttctcagaggaccactttggcgtggtgcag
acggcgttacccagcatccttagcacaatgctgctcctgcaagaggcagtggaccgacac
ttcaagctgcctcatgcttccacgaagcccatgcggacggcaggcggcatgggcgagcct
gcctacaaaacgctgcgtttcgctctcagggccgcgctcaagacggccatctatcgaatc
accaccacttttggagatcacctcaacgccgttcacatgtcggcagagcaccgcaagagg
ctgcagcttttcctgcactacaaggaatga

  All links  
Gene (23)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (1)   
   Pfam (1)   
All databases (35)   

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