KEGG   Hippocampus comes (tiger tail seahorse): 109527044
Entry
109527044         CDS       T04969                                 
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109527044 (cpsf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hcq03021]
    109527044 (cpsf4)
   03019 Messenger RNA biogenesis [BR:hcq03019]
    109527044 (cpsf4)
Transcription machinery [BR:hcq03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     109527044 (cpsf4)
Messenger RNA biogenesis [BR:hcq03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     109527044 (cpsf4)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH_3 zf-CCHC zf-CCCH_4 zf-CCHC_3 Nab2-like_zf-CCCH_ zf-C3H1
Other DBs
NCBI-GeneID: 109527044
NCBI-ProteinID: XP_019744282
UniProt: A0A3Q2XFM7
Position
Unknown
AA seq 265 aa
MQDLLASADHIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFMRAACLKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGAPEQPP
LPLQNQNQTKTGSMGRSSFSVIHLTNTSPGPRSHNNSSMPVTQQNHLISNRGPRPLDQVT
CYKCGEKGHYANKCNKGHLAFLSGQ
NT seq 798 nt   +upstreamnt  +downstreamnt
atgcaggatttactggctagcgcggatcacatcaagttcgacctggagattgccgtggag
caacagcttggggctcagcctctgccctttcccggcatggacaaatccgggtctgctgtg
tgtgagtttttcatgagagctgcgtgcctgaaaggtgggatgtgtcctttccgtcacatc
agcggagagaagacagttgtgtgcaagcactggctcagaggactttgcaagaaaggagac
cagtgcgagtttctccacgaatacgacatgacaaagatgcctgaatgctatttctactcc
aagtttggcgagtgtagcaacaaggaatgtccattcctgcacatcgatcccgagtccaag
atcaaggactgtccctggtatgatcgaggcttctgcaaacacggtcccgactgcaggcac
agacacacaagaagagtgatttgtgtcaattacctcgtgggtttctgtccagaaggaaaa
tcttgcaaatttatgcaccctcgttttgaattgccaatgggagcccccgagcagcctccc
ctgccgctacaaaaccaaaatcagacaaagacggggtccatgggccgctcgtcgttctcg
gtcatccacttgaccaacaccagccccggcccgcggtcgcacaacaactcttccatgcct
gtgactcaacagaatcatctcatttccaacagagggcctcgaccgctggaccaggtcacc
tgctacaagtgcggagaaaagggccactacgccaacaagtgtaataagggccatcttgcc
ttcttgagtgggcagtga

  All links  
Gene (14)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (27)   

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