KEGG   Ictalurus punctatus (channel catfish): 108266518
Entry
108266518         CDS       T04658                                 
Name
(RefSeq) pre-mRNA-splicing factor CWC22 homolog
  KO
K13100  pre-mRNA-splicing factor CWC22
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ipu03041]
    108266518
Spliceosome [BR:ipu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    108266518
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    108266518
SSDB
Motif
Pfam: MA3 MIF4G Apolipoprotein Cnd1 DUF7026 HEAT_5MP1_2
Other DBs
NCBI-GeneID: 108266518
NCBI-ProteinID: XP_017325433
Ensembl: ENSIPUG00000005831
UniProt: A0A2D0R4A7
Position
6:complement(7818409..7861082)
AA seq 1061 aa
MAAEHEAVMDLSSPSKDERSSPGGARDPEKTTRSSSSSDDSDSDGDEHMRRRDGERRSPS
PERRRDDADEQADQDASPRRSSRSSGSDGSSSSEEDSDDGVMHKLKSSVAHIRRDAQDES
SRPRRRSSSADRKGSGRSYSRSCSRSPSPQRRTDRARRSRDRDGDRRSDRRSSRDRDGAR
ERFRSRRERSASPSQREKPPADEPPVKKRKEELDPILTRTGGAYIPPAKLRMMQAQITDK
SSLAYQRMSWEALKKSINGLINKVNVSNIGNIIQELLQENIVRGRGLLARSVLQAQGASP
IFTHVYAAVVAIINSKFPQIGELILKRLILNFRKGYRRNDKQQCLTASKFVAHLINQNVA
HEVLCLEMLTLLLERPTDDSVEVSISFLKECGLKLSEVSPRGINAIFERLRNILHESEVD
KRVQYMIEVMFAIRKDGFKDHPIIPEGLDLVEEEDQFTHMLPLEDDYNTEDVLNVFKMDP
DFVENEEKYKAIKKEILDEGSSDSDNDAEGSDEEEAEEEDEDAEAGEDKVTIFDKTEVNL
VSFRRTIYLAIQSSLDFEECAHKLIKMDFPESQTKELCNMILDCCAQQRTYEKFFGLLAG
RFCLLKKDYMESFEAIFQEQYDTIHRLETNKLRNVARMFAHLLYTDSVPWSVLECMRMSE
ETTTSSSRIFVKILFQELCAYMGLPKLNERLKDTTLQPFFEGLFPRDNPRNTRFAINFFT
SIGLGGLTDELREHLKNAPKMIMTQNQDVESSDSDSSSSSSSSSDSSSSGSDSSDSDSSS
DSDSSSSGSSGKPYRGERAAKVALNVRDRGRRVSPDVRGRRDSPGVRERRRKDSPVARER
LRKDSPVARERLRKDSPVARERLRKDSPVARERLRKDSPVARERLRKESPVARERLRKES
PVARERLRKESPVARERLRKDSPVARERLRKDSPVAQERLRKDSPVAQERLRKDSPVARE
RLRKDSPDRGERKDRQYKNSRETEDSRKNKDTKSDSQRDRDCRRSRVKARSKSKSPERSS
KDVSSKDSYRNGVEREDKESRYRGSRRREDRSLERSPRRHR
NT seq 3186 nt   +upstreamnt  +downstreamnt
atggcggcggaacacgaagcggttatggatttgagttcgccttcaaaagatgagcgttcc
agtccaggaggagcgcgtgatcctgagaagacgacgaggagctccagttcttcagatgac
agcgacagcgatggagacgagcacatgagaaggagggacggtgaacggcgtagtccttct
ccagagagaagaagagacgacgcagatgaacaagcggatcaagacgcatcaccgagacgg
tcgtccaggtccagcggctcagacggtagcagcagcagtgaggaggacagtgacgatggt
gtgatgcacaaactgaagagcagcgtggcacacatcaggcgtgatgctcaggacgagagc
agcagacccagacgcaggagttcctctgcggacaggaaaggcagtggaaggtcgtattcc
cgctcttgctccagatctccgtctccacagagacgcacagaccgagcccgcaggtctcga
gatcgcgatggagaccggcgttctgatcggcgctccagccgtgaccgagatggagctcga
gagaggttcaggtccagaagggaaagatctgcgtctccatcacagagagagaaaccccct
gctgatgagcctccagttaagaagaggaaggaggagctggaccccatcctcacccgcacc
ggaggagcgtacattcccccggccaagctgcgcatgatgcaggcccaaatcaccgacaag
agcagtctggcgtaccagaggatgagctgggaagcgctgaagaagtccatcaacggtctc
atcaacaaagtaaacgtgtccaacatcggcaacatcatccaggagctgctgcaggagaac
atcgtccgcggcagaggtctgctggcgaggtccgtgcttcaggctcagggagcctctcct
atctttacccacgtctacgccgctgtggtggccatcatcaactccaaattcccacagatc
ggagagctcatcctcaagaggctcatcctcaacttccgcaaaggctacagacgaaacgac
aaacaacaatgtctcacagcctctaagtttgtggctcacctcatcaatcagaatgtggct
catgaagtgctgtgtttggagatgctgactctgctcttggagcgtcccactgatgacagc
gtggaggtgtccatcagcttcctgaaggagtgtggcctgaaactctcagaggtttccccc
cggggcattaatgccatctttgagcgcttgaggaacatcctacacgagtcagaggtcgat
aagcgtgtgcagtacatgattgaggtgatgtttgccatcaggaaggatggctttaaggac
catcccataattccagaaggcctggacctggtggaggaagaggaccagttcactcacatg
cttcctctggaggatgactacaacacagaggacgtgctcaatgtcttcaagatggatcct
gacttcgtggagaatgaagagaagtacaaggcgattaagaaggaaattctggacgagggc
agcagcgactcggacaacgatgcagaaggcagcgacgaagaggaggccgaggaggaagac
gaagatgcagaagccggagaagacaaagtcaccattttcgacaagacggaggtgaacctg
gtatcgtttcgccgcaccatttatctggccattcagtcaagcttggactttgaggaatgc
gctcacaagctgatcaagatggatttcccggagagccagacgaaggagctgtgtaacatg
atcctggactgctgcgcccagcagagaacctacgagaagttctttggtcttctggctggg
aggttctgcttgttgaagaaggactacatggagagcttcgaggccatcttccaggagcag
tacgacaccattcacaggctggagaccaacaagctgcgcaacgtggctagaatgttcgcg
cacctcctctatacagactccgtcccgtggagcgttctagagtgcatgcgaatgagcgag
gagacgacaacgtcctccagtcgtattttcgtcaagatcctcttccaggagctgtgcgct
tacatggggcttccgaagctcaacgagagactcaaggacacgaccctgcagccgttcttt
gaaggcctgttccctcgcgacaacccgaggaacacgagattcgccatcaatttcttcacc
tccatcggcctgggcggactcacagatgagttaagagagcatctgaagaatgcccctaag
atgatcatgacccagaaccaggatgtcgagtcatctgactctgactcctcctcctcctcg
tcctcatcatcagattcctcatcctcgggcagtgacagcagtgactcggattcctccagt
gactcagactccagcagttccggatcttcaggaaagccataccgtggtgaacgtgcagca
aaagttgctcttaatgtgcgagaccgcgggagaagggtctcgcctgacgtacgagggaga
agagactcccctggtgtgagagagcgcaggcgaaaggactctcctgttgcgcgagaacgc
ttgcgaaaggactctcctgttgcgcgagaacgcttgcgaaaggactctcctgttgcgcga
gaacgcttgcgaaaggactctcctgttgcgcgagaacgcttgcgaaaggactctcctgtt
gcgcgagaacgcttgcgaaaggagtctcctgttgcgcgagaacgcttgcgaaaggagtct
cctgttgcgcgagaacgcttgcgaaaggagtctcctgttgcgcgagaacgtttgcgaaag
gactctcctgttgcgcgagaacgcttgcgaaaggactctcctgttgcgcaagaacgcttg
cgaaaggactctcctgttgcgcaagaacgcttgcgaaaggactctcctgttgcacgagaa
cgcttgcgaaaggactctcctgaccggggagaacgcaaggaccggcaatacaaaaacagc
agagagaccgaggactcgcgcaaaaacaaggacaccaaaagtgactcgcagagagaccga
gattgccgacgcagccgagtgaaagcgaggtcaaagtcaaaatcgcctgagagaagcagc
aaggatgtttcctccaaagattcgtacaggaacggagtggagcgggaggacaaggagagc
cggtacagaggctccaggaggagagaggacaggagtctagagagatcaccaaggcgacac
agatag

  All links  
Gene (49)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (60)   

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