KEGG   Janibacter alittae: V1351_12705
Entry
V1351_12705       CDS       T10540                                 
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
jai  Janibacter alittae
Pathway
jai03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:jai00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    V1351_12705 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jai03400]
    V1351_12705 (ligD)
Enzymes [BR:jai01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     V1351_12705 (ligD)
DNA repair and recombination proteins [BR:jai03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     V1351_12705 (ligD)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C
Other DBs
NCBI-ProteinID: WXB75802
Position
2632238..2633170
AA seq 310 aa
MRPMLATLTESVPAGPQWVHEVKWDGMRVLVEAKGGALTVTSRTDRDVTVAYPELVPLAD
LYDDMVLDGELVALVDGRPSFAGLAERMHVGNARRAAALASSRPVTLMAFDLLRLLGQDL
TSQPWAARRQLLEQLEIDGPRWQVPPTYDDGEGLLDATADQGLEGIVSKRRASAYASGRR
SPDWLKLPHRHSESVVIGGWRREVGGSLLGAVLVGVPGPDGWDFVGRVGAGLAGRAGAAV
LHRLRPIERGGSPFASHVPREDATGTTWVEPEVVIDVASLGRASGRLRQPSYLRVRTDLT
SADLWETTDG
NT seq 933 nt   +upstreamnt  +downstreamnt
atgcgcccgatgctcgccacgctcaccgagtcggtccctgcggggccgcagtgggtgcac
gaggtcaagtgggacggcatgcgcgtcctcgtcgaggcgaaggggggcgccctcaccgtg
acgagtcgcacggaccgcgacgtcacggtcgcctaccccgagctcgtacccctggccgac
ctgtacgacgacatggtgctcgacggtgagctcgtcgccctcgttgacgggcgcccgtcc
ttcgccggtctggccgagcggatgcacgtcggcaacgcgcgtcgggcagcggcgctcgcc
tcgagccgacccgtgacgctcatggccttcgacctgctccgcctgctcgggcaggacctc
acctcccagccgtgggcggcccggcggcagctcctcgagcagctcgagatcgacggtcca
cgctggcaggtccccccgacctacgacgacggcgagggcctgctcgacgcgaccgccgac
cagggcctggagggcatcgtcagcaagcgccgcgcctccgcctacgccagcgggcgccgc
tcccccgactggctcaagctgccgcaccggcacagcgagtcggtcgtcatcggtggttgg
cgcagggaggtcggcggctccctcctgggcgcggtgctcgtcggcgtgccgggcccggac
gggtgggacttcgtcggtcgggtcggtgccggcctcgccggccgcgcgggggccgccgtg
ctccaccggctgcgcccgatcgagcgggggggctcccccttcgcctcgcacgtgccacgg
gaggacgcgaccgggacgacgtgggtcgagcccgaggtcgtcatcgacgtcgcgagcctc
ggccgggccagcgggcggctgcgccagccgtcgtacctgcgggtgcgcaccgacctcacc
tccgccgacctgtgggagaccaccgatggctga

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (2)   
   Pfam (2)   
All databases (3)   

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