KEGG   Kerstersia gyiorum: EHF36_09050
Entry
EHF36_09050       CDS       T05924                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
kgy  Kerstersia gyiorum
Brite
KEGG Orthology (KO) [BR:kgy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:kgy03009]
    EHF36_09050 (rlmD)
Enzymes [BR:kgy01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     EHF36_09050 (rlmD)
Ribosome biogenesis [BR:kgy03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    EHF36_09050 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRAM Methyltransf_25 Methyltransf_31 TRM5-TYW2_MTfase Methyltransf_23 MTS Methyltransf_32 RrnaAD zf-C3HC4_3
Other DBs
NCBI-ProteinID: QBR40761
Position
complement(2048671..2049978)
AA seq 435 aa
MQETLDIESLDMEARGVAHREGKVVFVEGALPGERVVARPLKTRPSYEVAEVERVLSAST
QRVLPRCRHFGVCGGCAMQHLEPAAQVAVKQRVLEDAFAHIGKLKPASMLAPLQGPAWGY
RFRARLSVRVVPSQGGVLIGFRERKSSFVADIRECHVLPAHVSHLLEPLHALVAGLSAPD
RVPQIELAVGDQVTVLVLRHLTPLKRQDIELLRGFGEQHGISWWLQPGGPETAHPLVRGD
DARLAYLLPAYGLRMPYRPTDFTQVNHALNRVLVVRALALLQCQPQDRVADFFCGLGNFS
LPLASCSREVVGVEGSAALTDRARLAAAQHGLADKAHFQTLNLFDIDVHWLRSLGYFDRM
LIDPPRDGAQALAEALTALLPAERPRRIVYVSCNPATLARDVAIMTRKGGYRLEQAGVIN
MFPHTAHVESIAVLS
NT seq 1308 nt   +upstreamnt  +downstreamnt
atgcaagaaacactagatattgaatcgctggacatggaggcgcgcggcgtcgcccatcgt
gagggcaaggttgttttcgtggagggcgcgctacctggcgagcgcgtcgtggcgcggcca
ctgaaaaccaggccgtcctacgaagtggctgaagtcgagcgcgtgctcagtgcgtctacg
cagcgtgtgctgccccggtgccggcactttggcgtctgtggcggctgtgccatgcagcac
ctggagcctgcggcccaggtggccgtcaagcagcgcgtactcgaggacgctttcgcgcat
atcggcaagttgaagccggccagcatgctggcgcctttgcagggtccggcgtggggttac
cgcttccgggcgcgcttgagcgtgcgggtggtgcccagccagggcggggtgttgatcggt
tttcgcgagcgtaagagcagctttgtggccgatatccgtgagtgccatgttttgcctgcg
catgtgtcgcatctgttggagcctttgcatgcgctggtggctggcttgtccgccccggac
cgcgtaccccagatcgagctggcggtcggcgaccaggtgacagtgctggtcctgcgccac
ctgacacctctcaagcgccaggatatcgaactgttgcgcgggttcggcgaacaacatggc
atttcctggtggctgcagcctggcggtccggagaccgcacatcccctggtgcgtggcgat
gacgcccggttggcctatctcttgccggcctatggcctgcgaatgccgtatcgccccacg
gacttcacccaggtcaaccatgcgctcaaccgggtgcttgtcgtgcgggccttggcgctg
ctgcaatgccagccccaggacagagtggcggattttttctgtgggctgggtaatttcagt
ctgccgctggcaagctgtagccgcgaagtcgttggcgtggagggcagtgctgccctgaca
gaccgcgcccgactggcggcagcgcagcatggcctggctgacaaagcccatttccagaca
ctcaacctgttcgacatcgacgtgcactggttgcgttcactggggtatttcgaccgcatg
ctgatagacccgccgcgcgatggcgcccaggcgctggccgaggcgctgacggccttgctg
ccggcggaacggccccgtcgcatcgtctatgtttcctgtaacccggccaccctggccagg
gacgtggccatcatgacacgcaagggcggctatcgcctggagcaggcaggcgtcatcaat
atgtttcctcacactgcccatgtggagtccatcgcagtgctatcctga

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (10)   
   Pfam (10)   
All databases (11)   

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