KEGG   Larimichthys crocea (large yellow croaker): 104940282
Entry
104940282         CDS       T04659                                 
Name
(RefSeq) poly(A) polymerase type 3 isoform X1
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    104940282
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lco03019]
    104940282
Enzymes [BR:lco01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     104940282
Messenger RNA biogenesis [BR:lco03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     104940282
SSDB
Motif
Pfam: PAP_central PAP_NTPase PAP_RNA-bind NTP_transf_2 MTPAP-like_central
Other DBs
NCBI-GeneID: 104940282
NCBI-ProteinID: XP_027128954
Position
XXI:4082626..4092242
AA seq 605 aa
MSVPIKSQAPSGPAPHKHFGVTDIISLDMPGICDMIESSELFKCLIVNGAHENNSELLHR
ENVVKNVESLYKEWLTEMCEAMNVPEIVTAKVGGKVFPFGSYHLGVHSKGADIDALCVGP
GFIQRDDFFTSFFEKLKSQKEVKDIRAIQDAFVPVIKMTFDGIEMDLVFAQVQRRSITDH
VNLLDDSWFNGIDRRCARSLNGYRVSETILHQVPNVENFQMVLRAIKLWAKRRKIYSNSL
GFLGGVSWTIMVARICQLYPNAAPSTLVKKFFWVYARWEWPSPILLKKVQDCGYKLPFWD
PMVNRSDRLDLMPIITPAYPQQNTSFNVCPSTLTIMKEEIVRGLVITEKIHDKKAPWSKL
FEPVDFAGMYKHFVLLQASSATEKQHLEWVGLVESKLRHLVGTLEKNITISLAHVNSQST
TGPTNENDKGLSTTWQIGILINKETSKNGIDLTSDLLSFSDMIYSLAEHSHIYEEGMTLS
ASYQRKERKDKKRALPTPKPTLSNVLQPHIPPEPMAVTNKLPAVSAVTTTQESKDSCSKS
NSKSLFLVNSQSIKRAGDNELESSGKRFRPDLNPPTVELSELPPNPTRPATVKKQAIKLQ
LFRRN
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgtctgttccaattaagagccaagctccatcaggcccagcaccccacaaacatttcggg
gtgactgacattatcagcctggacatgccaggaatctgtgacatgatcgagtccagtgag
ctgttcaagtgcctgatagtgaatggagcgcatgagaacaactcagaactgcttcacaga
gagaacgttgtcaaaaacgtggagtcactctacaaggagtggctcacagaaatgtgcgaa
gcaatgaatgtacctgaaattgtgacggccaaagttggtggaaaggtctttccctttggc
tcatatcatctgggagtccactcaaaaggtgctgatattgatgccctttgtgttggcccc
ggattcattcagcgcgacgacttctttacctccttcttcgagaaactgaagtctcagaag
gaggtcaaagacatacgtgcaattcaagacgcgtttgtcccagtcatcaaaatgaccttt
gatgggattgagatggacttagtgttcgcccaggtgcaacggcggagcatcactgatcac
gtaaacctgctggatgacagctggtttaacggtattgatcggcgctgtgccagaagtcta
aatggctatagggtttcagagacgatcctccatcaagttcccaacgtggagaactttcag
atggttttgagagccatcaagctgtgggccaaaagacggaagatttattcaaattcactg
gggttcttgggcggggtatcgtggaccataatggtggccaggatctgccagctgtaccca
aatgctgcaccgtccaccctggtgaagaagttcttctgggtctacgccagatgggaatgg
ccatcccccattcttctgaagaaagttcaggactgcggatataaacttccattttgggat
cccatggtcaaccgaagtgatcgcttggacttgatgcccatcatcacccctgcttacccc
cagcaaaacaccagcttcaacgtgtgtccgtctacattgaccatcatgaaggaggagatt
gtacggggccttgttatcacggaaaaaattcatgacaagaaagctccctggtccaaactt
tttgaaccagtggactttgctgggatgtacaagcatttcgttctgctgcaggcttcttca
gctacagagaagcagcatcttgaatgggttggcctggtggagtccaaactacggcacctg
gtggggacactcgagaagaacatcaccatttccctggcccatgtgaactcacagtccacc
actgggcccacaaatgaaaatgacaaaggactgagcaccacgtggcagattggcatcctc
atcaacaaggaaacgtctaaaaacggcatagacctgacctctgacctcctgtcctttagt
gatatgatctacagcctggcagagcactctcatatctatgaggagggaatgaccctatct
gcctcgtatcaaaggaaagaaagaaaagacaagaaaagggctttacctacaccaaagccc
acattgagcaatgttctgcagcctcacataccaccggaaccgatggctgtaacaaacaaa
ttgcctgcagtgtctgcagtcaccacaactcaggagagtaaagactcctgctccaagtcc
aactctaagagtctgtttcttgtgaactcacagagcattaagagagctggtgacaatgag
ctcgaatcatcgggcaaaagattcagacctgacctgaatccgcccactgtggagctttct
gagttgcctcccaaccccaccaggcctgccacagtgaagaaacaggccatcaagctccag
ctctttagacggaactga

  All links  
Gene (22)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (31)   

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