KEGG   Leucoraja erinaceus (little skate): 129695187
Entry
129695187         CDS       T09122                                 
Symbol
ercc3
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPB
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
leri  Leucoraja erinaceus (little skate)
Pathway
leri03022  Basal transcription factors
leri03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:leri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    129695187 (ercc3)
  09124 Replication and repair
   03420 Nucleotide excision repair
    129695187 (ercc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:leri03021]
    129695187 (ercc3)
   03400 DNA repair and recombination proteins [BR:leri03400]
    129695187 (ercc3)
Enzymes [BR:leri01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     129695187 (ercc3)
Transcription machinery [BR:leri03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     129695187 (ercc3)
DNA repair and recombination proteins [BR:leri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     129695187 (ercc3)
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom AAA_22 AAA_34
Other DBs
NCBI-GeneID: 129695187
NCBI-ProteinID: XP_055487934
Position
Unknown
AA seq 719 aa
MSLKDDHSSRPLWVAPDGHIFLEAFSPVYNYAQDFLVAISEPVCRPTHTHEYKLTAYSLY
AAVSVGLQTSDIIEYLQKLSKTSIPDGILQFIKLCTVSYGKLKLVLKHNRYFVESTHPDV
IQRVLQDKVIKQCRLRTAEGDETELIMGTVSSKSAMLMPKSTTQNNGAASTSRSEEPVAP
KPDVPADLFEFYEQMDKDEEEEEEQHTVSFEVKQEMIEELQKRCIHMEYPLLAEYDFRND
TVNPDVNIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTIRKR
CLVLCTSAVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMDWLKSQEWGLMLLDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLFEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIKTRKRMLLYVMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNRPYIYGPTSQGERMQILQNFTHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRPKKGMVAEEYNAFFY
SLVSQDTQEMAYSAKRQRFLVDQGYSFKVITKLAGMEEEDLSFSSKDEQQQLLQKVLAAS
DLDAEEEVVLGEFNSKGQICRRAGSMGSMSGADDTVYMEYQRSKSFGKNIHPLFKRFRK
NT seq 2160 nt   +upstreamnt  +downstreamnt
atgtccctgaaggatgaccactcctcccggccactctgggtggctcccgacgggcacatt
ttcctggaagccttctcaccggtctacaactacgctcaggacttcctggtggcgatctcc
gagccggtgtgccgccccacgcacacgcacgagtacaagctgaccgcctactccctgtac
gcggcggtcagcgtgggcctgcagaccagcgacatcatcgagtacctgcagaaactcagc
aagacctccattcccgatggcatcctgcagttcattaagctctgcaccgttagctatggg
aagctgaagctggtgctgaaacacaacaggtactttgtggagagcacccaccccgacgtg
atccagagggtgctgcaggacaaggtgatcaagcagtgccgactgcgcacagcagagggc
gacgagacggaactcatcatggggactgtctccagtaaatccgccatgttgatgcccaaa
tccacaacgcagaacaacggggccgcctcaacctcccggagcgaggagccagtcgctccc
aaacccgacgtccccgcggacctgtttgaattctacgagcagatggacaaggacgaggag
gaggaggaggaacaacacaccgtctcgtttgaagtcaagcaggagatgatcgaggagctg
cagaaacgctgcatccacatggagtatccgctgctggccgagtacgacttcaggaacgac
acggtcaaccccgacgtcaacatcgacctgaagcccactgccgtgctgcggccctaccag
gagaagagcctgcgcaagatgttcggcaacggccgcgctcgctccggggtcatcgtcctc
ccttgcggtgcggggaagtcgctggtgggcgtgacggcggcctgcaccattcgcaagcgg
tgcctggtgctgtgcacctcggccgtgtccgtggagcagtggaagtcccagttcaagatg
tggtccaccatcgacgacagccagatctgccgcttcacctctgacgccaaggacaagccc
atcggctgctcggtggccatcagcacctactccatgctggggcacaccaccaagcggtcg
tgggaggccgagcgggtcatggactggctcaagagccaggagtggggcctgatgctgctc
gacgaggtgcacaccatccccgcgaagatgttccggcgggtgctgaccatcgtgcaggcc
cactgcaagctgggactgacggccacgctggtgcgggaagacgacaagatcgttgacctc
aacttcctcatcgggcccaagctcttcgaagccaactggatggagctgcagaacagcggc
tacatcgccaaggtgcagtgtgctgaggtgtggtgcccgatgtcgccggagttttacagg
gagtacgtggccatcaaaaccaggaagcgtatgctgctgtatgtgatgaaccccaacaag
ttccgcgcctgccagttcctcatccgcttccacgagcggagaaacgacaagatcatcgta
ttcgccgacaacgtgtttgcgctgaaggagtacgccatccggctgaaccggccgtacatc
tatggccccacctcgcagggggagagaatgcagatcctgcagaacttcacgcacaaccct
aagatcaacactattttcatctccaaggttggcgacacctcgttcgatctccccgaggcc
aatgtgctgatccagatctcctcacacggggggtcccgacggcaggaggcccagcggctg
ggcagggtgctgaggccaaaaaaggggatggtcgccgaggagtacaacgccttcttctac
tccctggtgtcccaggacacacaggagatggcttactccgccaagaggcagcgcttcctg
gtggaccagggttacagcttcaaggtgatcaccaagctggctggcatggaggaggaggac
ctgtccttcagctccaaggatgagcagcagcagcttctgcagaaggtcctggccgcgtcc
gacctggatgctgaggaggaggtggtgctcggcgagttcaactccaagggacagatctgc
cggcgtgccggctcgatgggctccatgtcgggagcggacgacaccgtttacatggagtac
cagcggagcaagagcttcgggaagaacatccaccctctcttcaaacgcttcaggaagtga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (12)   

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