KEGG   Litorivicinus lipolyticus: GH975_11590
Entry
GH975_11590       CDS       T06278                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
llp  Litorivicinus lipolyticus
Pathway
llp02024  Quorum sensing
llp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:llp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GH975_11590 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    GH975_11590 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:llp03019]
    GH975_11590 (hfq)
   03036 Chromosome and associated proteins [BR:llp03036]
    GH975_11590 (hfq)
Messenger RNA biogenesis [BR:llp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     GH975_11590 (hfq)
Chromosome and associated proteins [BR:llp03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    GH975_11590 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QGG81170
UniProt: A0A5Q2QH53
Position
complement(2267750..2268058)
AA seq 102 aa
MSKGHSLQDPYLNVLRKERVPVSIFLVNGIKLQGQIESFDQFVVLLKNTVSQMVYKHAIS
TVVPARNVKLPMPGAEDEIDAEEEKPARKFGEHNLKPLDEQE
NT seq 309 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcactcattacaagacccttacctaaacgtactccgcaaggaacgtgtt
ccggtctccatctttttggtcaacggcattaagctgcagggccaaatcgaatctttcgat
caattcgttgtgctgcttaaaaataccgtcagccagatggtttataagcacgcgatttcg
accgtggtgccggcccgaaacgtcaagctgccgatgcctggcgccgaagacgagatcgac
gcggaagaggaaaagcccgcgcgcaagttcggtgaacacaatctgaaaccgctcgacgag
caggaataa

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