KEGG   Loa loa (eye worm): LOAG_02052
Entry
LOAG_02052        CDS       T02664                                 

Name
(RefSeq) CCR4-NOT transcription complex subunit 6 family protein
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
loa  Loa loa (eye worm)
Pathway
loa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:loa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOAG_02052
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:loa03019]
    LOAG_02052
Enzymes [BR:loa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     LOAG_02052
Messenger RNA biogenesis [BR:loa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     LOAG_02052
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     LOAG_02052
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4
Other DBs
NCBI-GeneID: 9939433
NCBI-ProteinID: XP_020303673
AA seq 601 aa
MTTSSAKHDLPYVPGAHHHEFALPNGDAHGHERCATSAGLPLTKSESTDGRKKLPNGMLR
VHRIMTEEELAQGKEPRWTELEIRGRNLSPFLWEMRCLTALFLYKNHLTRIPCEISKLEN
LTVLDLSENKLRSLPAELGDMISLCHLYLNGNQIRVLPYELGKLFRLQTLDLRSNPLSPE
INKIYYEAGPQKLLRFLLDHLAINATVPPDRQWVMIRHADPERPIATFTVLCYNVLCDKY
ATNSLYSYCPSWALNWEYRKAAILKEIRHYEADIITLQEVETEQFRCLFQPELEQIGYAG
IFSPKSRAKTMGEEERKFVDGCAIFWKYDKFELEKEHLIEFTQVAIRKAPTSEKILNRVM
PKDNIALCAVFKIKENVYANRQMTMAPSDNVVGNPLVVSTAHIHWDPEFCDVKLIQSMML
VQEINTLLDEISERYRITPQQIPVLICGDLNSLPESGVVEFLSKGAISREHPDLKEFRQD
PCITRFSASDDPTVYTHALRLDCAVDPNSMPFTNYTLEFKGVIDYIFSTPQSLARLGVLG
PLNMEWVLANKIIGFPHPHVPSDHVPIMAQFAIIPTTHQRTQPVVHHYGNSHSSSFGAVG
R
NT seq 1806 nt   +upstreamnt  +downstreamnt
atgacaaccagtagcgcaaaacacgacctaccatatgtgccgggtgcacatcatcatgaa
ttcgcgttacctaatggtgatgcgcatggacatgaaagatgcgccacctcagctggcttg
cctttaacaaaatcggaaagtacggacggtagaaagaagttgccgaacggcatgttgcgg
gtgcatcgtataatgactgaggaagaacttgcgcagggtaaagaaccgcgttggacggag
ctcgagatacgcggtcgcaatctaagtccatttttgtgggaaatgagatgtcttaccgcc
cttttcttgtacaaaaaccatctgacgagaattccttgtgaaatttcgaagttagagaac
ttgacagtgctggatttgtctgaaaataaactacgtagtctgccagctgagctgggcgat
atgatctctttatgtcacctttacctcaatggcaaccaaataagggtcctcccatacgag
ctgggcaagctgtttcgtttacaaacccttgatcttcggtcaaatcctctttctcccgaa
attaataaaatttattatgaagctggacctcagaaactgcttcgatttctgttagatcat
ctggcaataaatgcgacagtacctccggatcgccagtgggtgatgataaggcacgcggat
cctgaaagaccgatcgcgacgttcactgttctttgctataacgttctgtgtgataaatac
gccacaaacagtctctactcatattgtccatcctgggctctcaattgggaatatcgaaaa
gcagcaattttaaaggagatccgacattacgaagctgatattatcaccttgcaagaagtg
gagactgaacagttccgttgcctttttcaacctgagttagagcaaatcggctatgcgggc
attttttcaccaaaatcacgggcgaaaacgatgggtgaggaagaacggaaatttgttgac
ggttgtgcgatcttttggaagtatgacaaatttgagctggagaaagaacatctcattgag
tttactcaggtagctatcaggaaagctccaacaagtgagaaaatcttgaatcgtgttatg
ccaaaggataacattgctctttgtgctgttttcaaaatcaaagaaaatgtctacgccaat
cgacaaatgactatggctccaagcgacaatgtggttggaaatccacttgttgtgagtacc
gcacatattcactgggatccagaattttgcgatgtaaagctgattcagtccatgatgttg
gtgcaggagataaataccttgctggatgaaatatcggaaagatatcgtataacaccacag
cagataccagttctaatttgtggcgatctcaattcacttcctgaatcaggagttgtggag
tttctgtcgaagggagcaatttcaagggagcatccggatctcaaggaattccgtcaggat
ccttgtattacacgttttagtgcgtccgatgatccgacggtttatacccacgcactcaga
cttgactgcgctgtggaccctaactcaatgccgtttacaaattacacgcttgaatttaaa
ggtgttatcgactacatcttctcaacaccgcagtcattagctcgtttgggagtattagga
ccgctgaatatggaatgggtactggcaaataaaataatcggttttccacatccccacgtg
ccctcagatcacgttccaataatggcccagtttgcaatcatcccaacaacccatcagcgt
actcagcctgttgtccaccactatggtaacagtcattccagttcatttggtgctgttggt
cgataa

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