KEGG T07349: 102682515

Lepisosteus oculatus (spotted gar): 102682515

Entry

102682515         CDS       T07349

Symbol

upf2

Name

(RefSeq) regulator of nonsense transcripts 2 isoform X1

K14327

regulator of nonsense transcripts 2

Organism

loc Lepisosteus oculatus (spotted gar)

Pathway

loc03013

Nucleocytoplasmic transport

loc03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:loc00001]
09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102682515 (upf2)
   03015 mRNA surveillance pathway
    102682515 (upf2)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:loc03019]
    102682515 (upf2)
Messenger RNA biogenesis [BR:loc03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     102682515 (upf2)
   mRNA cycle factors
    P-body specific factors
     102682515 (upf2)

SSDB

Motif

Pfam:

MIF4G Upf2

Other DBs

NCBI-GeneID:

102682515

NCBI-ProteinID:

XP_015207794

Ensembl:

ENSLOCG00000015698

Position

LG8:complement(14503445..14537994)

AA seq 1279 aa
MDEKEVCSFSNKEKESGDRRPASSREKGKEDPKVSGKKENAKTVEEKKRRLEEEKRKKEE
KERKKKEEEKLKAEEEQRKREEEEKKQQEEEEKRMQEEEEKRQREEEAARLKEKEEAHQL
HQEAWERHQARKDLRSKNQNAQEGRPEETFFSRLDSSLKKNTAFVKKLKTITEQQRDSLS
NDFNSLNLSKYIAEAVGSIVEAKLKISDVNCAVHLCSLFHQRYADFAPLLLQAWKKHFEA
RKEEKTPNVSKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKTIINIDRETHMHVSVVIS
FCKHCGDDIAGLVPRKMKMASEKFNLSFPPSEIINTEKQQPFQNLLREYFTSLTKHLKKD
HRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADLLDENMPELPQD
KTVQEEHGPGIDIFTPGKPGDYDLEGGIWEDEDARNFYENMVDLKAFVPAILFKDNEKSS
QSKDKEDVKDFKDGKDKEVQSTEELELELETLDINDDALELEGGDEADTDDLAKKLLDEQ
GRGQEREGASFSGEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTK
SNRKKLVRALFTVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQI
NIETKNKTVRFIGELTKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSP
ESHLRASVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPVEKTVRKKRPPLQEYIRKL
LYKDLSKVTTEKVLRQMRKLPWQDPEIKNYLICCMVNIWNVKYNSIHCVANLLAGLVAYQ
EDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFIS
FGVNPDGSPSPLDPPEHLFRIRLVCTVLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKS
LDVWTKDHPFPIDIDYMISDTLELLRPKMKLCCSLEEAMRQVAELEREFLVKLGLANDKD
SKGSSSMEEGEALEDEEDDDDEEGGAETEEQSGNESELNEPEEEEVSENEEEDREEEEEE
NTDYLTDSNKENETDEENTEVTIMGGGLKHVACAEDEEFIQALDKMMLENLQQRSGESVK
VHQLDVAIPLQLKSQLKKGPPPVVGGEGDTEMVDTMQFVMLTRKGNKQQFKILNVPLSSH
LAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQ
HPKGAPNADLIFKTGGRRR

NT seq 3840 nt +upstreamnt +downstreamnt
atggatgaaaaagaggtgtgttctttcagcaacaaagagaaagagagtggcgacaggcgc
cccgcctcgtccagggagaagggaaaggaagaccccaaggtcagtggtaagaaagagaat
gccaaaactgtagaggagaagaagagaaggctggaagaggagaagcgcaagaaggaggag
aaggagcgcaagaagaaagaggaggagaagctgaaagctgaagaggagcagcgcaagagg
gaggaggaggagaaaaaacagcaggaggaagaggagaagaggatgcaggaggaagaggag
aagaggcagcgggaagaagaggcagctcggttgaaagaaaaagaggaagcgcatcagctt
caccaggaagcgtgggaacggcaccaagcaaggaaagacctgcgaagtaaaaaccagaat
gcccaggagggcagaccagaggagacgttctttagcaggcttgattccagtctcaagaag
aacaccgcctttgtgaagaagctgaaaacgatcacggagcagcagagagattctctctcg
aatgatttcaatagcctcaatctgagtaaatacattgccgaagccgtgggctccattgtg
gaggccaagctgaagatatctgatgttaactgtgctgtgcatttgtgttctctcttccat
cagcgatatgctgactttgccccattactactccaagcctggaaaaagcattttgaggca
agaaaggaagaaaaaacaccaaatgtaagcaagcttagaacagatctgcggtttattgct
gagctcacaattgttgggatttttactgataaagagggtctgtccctgatctatgagcag
ctaaaaactatcatcaacatagaccgcgaaacacacatgcatgtttcagtggttatcagt
ttttgcaagcattgtggggatgatattgctggtctagtgcctaggaagatgaagatggca
tctgagaagtttaacctcagtttccctccaagtgagataattaatacagaaaagcagcag
cccttccagaacctcctgcgggagtatttcacatcgctgactaaacaccttaagaaggat
cacagagagctgcagaacattgagagacaaaacaggcgtattctacattccaagggggag
ctgagtgaagatcgacacaaacaatatgaagagtttgccacttcttaccaaaagctgctt
gctaacactcagtccttagcagatctcctagatgaaaacatgccagagctgcctcaagat
aaaacagtgcaagaagaacatggacctggaatagacatctttactcctggcaaacctgga
gattatgacctggagggaggaatctgggaggatgaggatgcaaggaatttttatgaaaac
atggtggacctgaaagcctttgtgccagctatattgttcaaagacaatgagaagagctct
cagagcaaagacaaagaggatgtaaaagattttaaggatgggaaggataaggaagttcag
agcactgaggagttggaactagagttggaaaccttagatatcaatgatgacgctctcgag
ctggaaggaggggatgaggcagacacagatgacctcgctaagaagctactggatgaacaa
ggaagaggtcaggaaagagagggagcctctttttctggagagcaagaagacgaggaagcc
agcactgggtcccacctgaagctgattgtggatgcctttcttcagcagctgcctaactgt
gtgaatagagacttaatagacaaggccgcgatggatttctgtatgaatatgaacaccaaa
tctaataggaaaaaacttgtccgagctctcttcacagttcctaggcaacggttggacttg
ttgccattttatgctcgtctagttgctacactgcatccttgcatgtctgacgtggcagag
gacctgtgttcaatgttgaagggagatttcaggtttcatataaggaagaaggatcagatc
aacatagaaacaaaaaataaaactgtgaggtttattggtgaactaaccaagttcaagatg
ttttctaaaactgacacacttcattgtttaaagatgctattgtctgacttttctcatcac
cacattgagatggcatgcacccttctagagacctgcggcaggtttctcttcaggtctcca
gaatcacacttaagagctagtgttcttctggaacaaatgatgcggaagaaacaggcaatg
cacttagatgcccgctacgttacaatggtagaaaatgcttattattactgtaacccacca
cctgttgagaaaaccgttcggaagaagcgacctccacttcaagaatacatccggaaactc
ctttacaaggacctttccaaagtcactactgaaaaggttttgcgacagatgagaaaattg
ccctggcaggacccagagataaaaaactatttgatttgttgtatggtgaatatctggaat
gtgaagtacaatagtatccactgtgtggcaaatctgctagcagggttggtggcttatcag
gaggatgtgggcatccacgtggtagatggggtcttagaggacatcaggctgggaatggag
gttaaccagcctaaattcaatcaaaggcgtatcagcagtgctaagtttttgggagaatta
tacaactatagaatggtggagtcagcagttatctttcggactctgtattcctttatttcg
ttcggtgtaaaccccgatggcagtccaagcccactggacccgccagagcacctgttccgc
atccgactggtttgcactgtgctggacacctgcggacagtactttgacagaggctccagc
aaaaggaaacttgactgctttctcatttacttccagcgttatatctggtggaaaaagagc
ctggacgtgtggactaaagaccacccctttcctattgatattgactacatgatcagtgac
acgttagagctcctacgtcccaagatgaaactctgctgctcactggaggaggctatgagg
caggtcgcagagcttgagcgagagttcctggtaaagcttggtctggccaatgataaggat
tccaaaggctcaagtagcatggaagaaggagaggctctggaggatgaggaagatgatgat
gatgaggaaggtggggctgaaactgaggagcagtctggaaatgagagtgaattgaatgag
ccagaggaggaggaggtctcagagaacgaggaagaagacagagaggaagaggaggaggag
aatactgactacttgacagactccaataaagagaatgaaaccgatgaagaaaacacagag
gtgactataatgggtggaggtcttaaacatgttgcctgtgcagaggatgaggaatttatt
caggctctggataaaatgatgctggagaatcttcagcagcggagtggagaatcagtcaaa
gtgcatcagctggatgtagctattcccctgcagctgaagagccagctgaagaagggccct
cctccagtagtaggtggggaaggagataccgagatggttgatacaatgcagtttgtcatg
ttaaccaggaaggggaacaagcagcagttcaagatccttaatgtcccgctttcatcacat
cttgctgccaaccacttcaaccagcagcaggcagagcaagaggagaggatgcgtatgaag
aagctgaccctggacatcaacgagcgccaagagcaggaggactatcaggagatgctgcag
tccctggctcagcgcccagcccctgccaacacgaaccgagaaagacggccacgctaccag
caccctaaaggagcacccaatgctgatctcatctttaagacaggagggaggagacgttga

All links

Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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