KEGG   Lepisosteus oculatus (spotted gar): 102694323
Entry
102694323         CDS       T07349                                 
Symbol
smg6
Name
(RefSeq) LOW QUALITY PROTEIN: telomerase-binding protein EST1A
  KO
K11124  protein SMG6 [EC:3.1.-.-]
Organism
loc  Lepisosteus oculatus (spotted gar)
Pathway
loc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:loc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102694323 (smg6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:loc03019]
    102694323 (smg6)
   03032 DNA replication proteins [BR:loc03032]
    102694323 (smg6)
Messenger RNA biogenesis [BR:loc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     102694323 (smg6)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     102694323 (smg6)
DNA replication proteins [BR:loc03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (animals)
    102694323 (smg6)
SSDB
Motif
Pfam: EST1_DNA_bind PIN_4 EST1
Other DBs
NCBI-GeneID: 102694323
NCBI-ProteinID: XP_015222833
Ensembl: ENSLOCG00000006448
Position
LG22:10165987..10249054
AA seq 1474 aa
METKMADELERVRISAAELRGGAALGRSREHSPRGGEPTGGCIERQRGAMPASVSSTGGC
GGPCQPLACDRDLRLQLVAAGASPKPARRVRKPDREIYQPGGRRLQQQAGKAAGPSKEPA
TGKEPGADRTRVPGKDVLSRKESPASRESKQEPGRPKDAPAKSRDPAGESLSARTERLSL
SEGAEGEERRGKRAGSEEGGRRKKAGSEGRREGGGGAREAEGEGWRGREDEGPARRQXAS
SRSYSRSDKRCPRHRTCSTSSASSGTSLDGGGGRQARDRAAGSAPASAGLGDRRERARAL
ARARRDLSSTDSLEEGGPGSGEEWWRARERDRDDGGSAERRRGGGRGQGGAGSGRNTGGV
LRVSFDRPGGSAELSEQRKREEAGPRGRGRGILVLPAHTDLNAPAEVGPRLLGGGRGGRG
RGRGGATRRLWDPNNPDQKPALLKTQHQHLQQQQLHFLDTDDEVAGSPPIQQGEPFQSFR
VSQQAAAAYYKFQNSDNPYYYQSPPTRYPYPYHVPYQMPGMNGVFSSPPGVPYFPGYGQP
GSQGYLTPLTPEEAEVQVRGLQQQELGKLLRIADSQELQLSNLLSRDRLSPEGLDRMTQL
RAELLLLYERVILSDIEFSDAQNLDQVLWKNVFYQVIEKFRQLLKDPPNETTPRIRTMLL
TLLDEGAVFFDALLQKLQTVFQFKLEDYMDGMAIRSRPLSKTVKYALISAQRCMICLGDI
ARYREQANDTTNYGKARSWYLKAQQIAPKNGRPYNQLALLAVYTKRKLDAVYYYMRSLAA
SNPILTAKESLMSLFEETKRKMDQLKCRNQPQDWDWAGGSSGPRGSGGGRGEDAARVEIW
LRPGEQRQPRAGSESGRESEQDSELGSLSASDLNKRFILSFLHAHGKLFTKVGMESFPEM
AARVLQEFRVLLQHSPSPLGSTRMLQIITINMFAVYNAHSRDPGGEDSRSALQEQTTALG
LAMFALLVRRCTALLTETPRAPPGVDESDGGEEEAAVAKVSSFPPDLRELLPSVKVWSDW
MLGQPEQWNPPPPSLPLPHSCTPDVWQCLAELCNALAAVSQGEVPLYKDPDEELSLLVLE
EDRVLSGFVPLLGAPQEPCYVDSDCNKAIAADCKRVTVLKYFLEALCGQEEPLLAFKGGK
YVSMAAVPHTMGKETGSHEGEQADNQVVWSCPPPLSVGVRVRRGQSARVRGKGRHPQMGP
LSLQLACDITALGQEMGSSNVSVVSGTLCPLSWSWVAPDAGRYWGKGFPTQPGSGSEDDI
RELRARRQALAQKLAQEQRRRDKIQELLQTCRQLEIEITPLFLVPDTNGFIDHLDGLACL
MACGSYILVVPLIVITELDGLARGQDTERRSGSHARQVQERARAAISFLERAFVAREPCL
RALTSRGNELESIAFRSEDTSGQQGNNDDLILSCCLHYCKDKAKDFMPTQKDGPVCLRRE
VVLLTDDRNLRVKALTRNVPVRDIPAFLKWAKVG
NT seq 4425 nt   +upstreamnt  +downstreamnt
atggagacgaagatggcggatgagctggagcgagtgcggatctccgccgcggagctgaga
gggggagcggcgctcggacgcagccgggagcacagcccccgaggcggggagccgacaggg
ggctgcatcgagcgccaacgaggcgccatgccagcaagcgtctcctctactgggggttgt
gggggtccttgtcaaccgctggcttgcgacagagacctccggcttcagctcgtggccgcc
ggtgcgtccccgaagccggcgcgcagagtccgcaaacccgaccgggagatctaccagccc
ggcgggcggaggctccagcagcaggccggtaaggccgcgggtccgagcaaggaacctgcg
acgggaaaagaaccaggagccgacaggactcgggtgccggggaaggacgtcctgtccagg
aaggagagtccggccagcagggagagcaagcaggagccagggcggcccaaggatgctccg
gcaaagagcagggacccggcgggcgagagcctgagcgcgcgaacagagaggctgagcctt
tcggagggggcggagggggaggagaggagggggaagagagcagggagcgaggagggaggg
cggaggaagaaggcggggagcgaggggaggagggagggaggtggtggagccagagaagca
gagggagagggatggagaggaagggaggacgaaggccccgcacggcggcagnncgcctcc
tctcgctcttactccaggtcagacaagcggtgcccccgccaccgcacctgcagcaccagc
tccgccagcagcgggaccagcctggacggggggggcggccggcaggcccgggacagggct
gcgggatcggcccccgcctccgcgggcctgggggacaggagggagagggcgcgggcgctg
gcgcgggcgcggcgggacctgtcctccacggactccctggaggagggcgggccggggagc
ggggaggagtggtggagagcccgggagagggaccgggacgatggcgggagcgcggagagg
aggcgcggcgggggcagggggcagggcggggcaggcagcgggaggaacaccggcggggtg
ctgagagtgtcctttgaccgccccggcggctccgcggagctgtcggaacagcggaagcga
gaggaggcgggaccccggggcaggggtaggggcatcctggtgctccctgcccacactgac
ctgaatgccccagcggaggtcgggcctcgtctgctgggtggggggcgagggggtaggggc
cgcggcagggggggggccaccaggaggctgtgggatcccaacaacccagatcagaagcca
gccctgctgaagacgcagcatcagcacttacagcagcagcagttgcacttcttggacaca
gatgatgaggtggcagggagccctcctatccagcagggggagcccttccagagtttccga
gtttctcagcaggctgctgcagcctattacaaattccagaactccgacaacccttactat
taccagtcgcctcccacaagatatccctacccctaccacgtgccgtaccagatgccaggc
atgaacggagtgttctcctcacctcccggtgtcccctatttccccggatacggccagccg
gggagtcaggggtacctgaccccactgacccccgaggaggcggaggtgcaggtgcggggg
ctgcagcagcaggagctggggaagctgcttcgcattgcagacagtcaggagctgcagctc
agcaacctgctgtcccgggaccggctcagcccggagggactggacaggatgacccagctg
agggcagagctgctcttgctgtacgagcgcgtgattctcagcgacatcgagttctcggac
gcccagaacctggaccaggttctgtggaagaatgtcttctaccaggtgatagagaagttc
cgtcagctgctgaaggacccacccaacgagaccacgccaaggatcagaaccatgctgctg
acgctgctggatgagggggccgtgttcttcgatgcgctgctgcagaagctgcagacagtg
tttcagttcaagctggaggactacatggatggcatggccatccgcagccgcccgctgagc
aagacagtgaaatacgcactgatcagtgcccagagatgtatgatctgcctgggagacatt
gccaggtaccgcgagcaggccaacgataccacaaattatgggaaggcgcgcagctggtac
ctgaaggcacagcagatcgcccccaaaaatggacgcccctataaccagctggccctcctg
gctgtgtacacgaagaggaagctggacgcagtttattactacatgcgcagcctggctgcc
agtaaccccatcctgacggccaaggagagtctcatgagcctgtttgaggagaccaagcgc
aagatggaccagctgaagtgccggaaccagccgcaggactgggattgggcgggaggcagc
tcgggcccccgggggtccggcgggggccgcggggaggacgcagcgcgggtggagatctgg
ttgcggccgggagagcagaggcagccccgggccggaagcgagtccggcagagagtcggag
caggacagcgagctggggtctctgagcgccagtgacttgaataagcggttcatcctcagc
ttcctgcatgctcacggaaagctgttcaccaaagtggggatggagtcgttccccgagatg
gcggcccgggtccttcaggagttccgcgtgctgctgcagcacagcccctctcccctgggc
agcacgcgcatgctgcagatcatcaccatcaacatgttcgccgtgtacaacgcgcacagc
cgggaccccggcggcgaggactcgcgctcggcgctgcaggagcagaccacggcgctgggc
ctggccatgttcgccctgctggtgcggcgctgcacggcgctgctgacggagacgccaagg
gcgccccccggtgtcgacgagagtgacggcggggaggaggaggcggcggtggcgaaggtg
tcctccttccctccggacctgcgggagctgctgcccagcgtgaaggtgtggtccgactgg
atgctggggcagccggagcagtggaacccccctccgcccagcctgccgctgccccacagc
tgtaccccagatgtgtggcagtgcctggcggagctgtgcaacgcgctggccgcggtgagc
cagggggaggtgccgctgtacaaggacccagacgaggagctgagcctgctagtgctggag
gaggaccgcgtgctttcggggttcgtccctctcctcggggcgccccaggaaccctgctac
gtcgacagcgactgcaacaaggcgatagcggcggactgcaagagggtcacagtgctgaag
tatttcctggaagcgctgtgcggacaagaagaacctctgctggcgttcaagggtggaaag
tatgtgtcgatggcagccgtcccacacaccatgggaaaggaaacaggaagccatgaggga
gaacaagcagacaatcaggtagtgtggagctgtcccccccctctctccgtgggggtgcgg
gtgcggcgtgggcagtcagcccgggtcaggggaaaggggcgacatccacagatgggaccc
ctgtctctccagctggcctgtgacatcactgctctggggcaggaaatggggagcagcaac
gtcagcgtggtgtctgggactctctgccccctcagctggagctgggtagcaccggacgct
gggcgttactggggcaagggctttcccacccagcccggcagcggcagtgaggacgacatc
agggagctgcgggcacggcgccaggccctggcacagaaactggcgcaggagcagcgtcgc
agggacaagatccaggagttgctgcagacctgccggcagctggagatcgagatcacgccc
ctcttcctcgtccccgacaccaacggcttcatcgatcacctggacggactggcatgcctg
atggcttgtggcagctacatcctggtggtgcccctcatcgtgatcacggagctggacggg
ctggcgcggggccaggacacggagcgccgcagcggcagccacgcgcggcaggtgcaggag
cgcgcgcgggccgccatctccttcctggagcgcgccttcgtggcgagagagccctgtctg
cgcgcgctaaccagccgcggcaacgagctggagtccatcgccttccggagcgaggacacc
tccggacagcaggggaacaacgatgacctgatcctgtcctgctgtctgcactactgcaag
gacaaggccaaggacttcatgcccactcagaaagacgggccggtctgcttgcgccgagaa
gtggtcctgctgacagatgaccggaacctgcgggtgaaggcgctgacccggaacgtcccg
gtccgcgacatccctgccttcctcaagtgggccaaagtgggatga

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