KEGG   Lepisosteus oculatus (spotted gar): 102695795
Entry
102695795         CDS       T07349                                 
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
  KO
K14315  nucleoporin NDC1
Organism
loc  Lepisosteus oculatus (spotted gar)
Pathway
loc03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:loc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102695795 (ndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:loc03019]
    102695795 (ndc1)
Messenger RNA biogenesis [BR:loc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     102695795 (ndc1)
SSDB
Motif
Pfam: Ndc1_Nup
Other DBs
NCBI-GeneID: 102695795
NCBI-ProteinID: XP_015210884
Ensembl: ENSLOCG00000003080
UniProt: W5M5I4
Position
LG10:complement(3665335..3678482)
AA seq 678 aa
MLSFGQDHWFIRKVICWRAAASIAWSVLLLPVITALFVFLSHLDLFHPVQWISDSLSVLG
GSYVIFSVVLLCLVVLVVGFFDLQYYTVVPSIPCTKIALIGKVLHPQQFIHSLAHCLMGL
LVSWCAAVMIGGRYHVFAKPCHSEESHQMCLNEYHLFFLLAGAFMGYSYSLLSVVKNMNY
VSFQTIQQYKYLRFKGTLPVVIKHSAVQSLYSVRNYCITYLFLGYIPRAWICTTMNLSRD
STLHALDTLAGLLDFSLMFHLWITGTFLLVMWYITWLLFRIYITEMYWFPVQSTFSENAS
QCLPKVLTGQQPPILKFLALQDLALLSQNSPSRRQEVFSLSQPGGHPHNWTAISGECLGL
LSDLTRRLVAYHEAVASNGRVKQQSAGSDKKSSSSSSSSSSSEPSGLGELAGWPVQTPRA
GAGLRTPGSVLARSSLGGLRSPLTAPFTPDLGSPFGSPAIQRFARTLDPASPWYGSVQSP
HVMRRGPKLWTSSTDTLANGSPAVSPAPEPRVSPAEHKPSFFSLWLQNRREQVKTFLAKR
VLVMYLFNKLPEASSQALFADSQAHIWALEGLSNLVAASYTEDRFGVVQTTFPNILSTML
TLLEAVDKHFKLPHASSKPVQSSGSLEDTTYKTLRFALRASLKTAIYRITVTFGEHLNAV
EVSAEHRKRLQQFMEYKE
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgctttcgtttgggcaggaccattggttcattcgaaaggtgatatgttggagggcagca
gcaagcattgcttggtcagtgctgttgttaccagttattacagcactgtttgtgtttttg
agccatcttgatctgttccatcctgtgcaatggatatcagattcactgagcgtcctgggt
ggttcctatgttattttttctgtggttcttctgtgcttggtggtgctggttgttggcttt
ttcgatctgcagtattacacagtggtgccatcaattccctgcactaagatagctctgatt
ggaaaggtgcttcaccctcagcagtttatccactccttggctcactgtctgatggggttg
ctggtgtcttggtgtgcagcagtcatgatcgggggaagataccacgtttttgccaagcct
tgtcattcagaggaaagtcatcagatgtgcctcaatgagtaccatctcttcttcctgttg
gctggtgctttcatggggtacagctacagtctgctcagtgttgttaaaaacatgaactat
gtctcttttcagaccatacagcaatacaagtatttgcgcttcaagggaaccttaccagtg
gtgattaaacacagcgcagttcagtcattgtattcagtgcggaactactgcattacatat
ttattcttgggctatatccccagagcatggatctgtacaaccatgaacctcagtagagac
agcactcttcacgcactggatacactggcagggctcctggacttttctctgatgttccat
ctgtggataactggtacctttcttctggtaatgtggtacatcacatggctcctcttcaga
atctatatcacggagatgtactggtttcccgtgcaatcgacgttttcggagaatgccagc
cagtgccttcctaaagttttaaccggccagcagcccccaattctgaagtttttagcgctg
caggacttggccttgctgtctcagaattcgccgtctagaagacaggaggtgttcagctta
agtcagcctggaggccacccccacaactggaccgctataagcggcgagtgtttaggcttg
ctgagcgacctgactcggaggctggttgcttaccacgaagctgttgcgtccaatgggaga
gtgaaacagcagtctgcaggcagcgacaaaaagtcatcctcctcctcctcctcctcaagc
agttcagagccgtccggtttgggagaactggccgggtggccggtgcagacccccagagcc
ggtgccgggctgagaacgcccggttctgtgttggcgaggtcctcgctggggggtctgagg
agcccgctgacggcacccttcacccccgatctcggaagcccgttcggttccccggcgatc
cagcgtttcgcgagaacgctcgacccggcttccccctggtacggctctgtgcagagtcct
cacgtcatgaggaggggacccaaactgtggacttcatctacagacacgctggcgaatggg
agtcctgccgtttccccagctccagagccaagggtctccccagcggagcacaagcccagc
ttcttctccctgtggctgcagaacaggcgggagcaggttaaaactttcttggctaagcgg
gtgctggtaatgtatttatttaataagcttccagaagcctctagtcaagccctgtttgct
gacagtcaagctcacatctgggcccttgaaggactgtctaatttagttgctgcttcttac
acagaggacaggtttggggttgtacagactacatttcccaacatcctcagtacgatgctg
accttgctggaggcggtagacaagcacttcaagttgccccatgcctccagcaagccggtt
caatcttcagggagcctggaggacactacatacaagaccctgaggtttgccctgcgggcc
tctctgaaaaccgccatctacaggataacggtcaccttcggagagcatttgaacgctgtt
gaggtgtctgcggagcaccgaaagagacttcagcagttcatggagtacaaggagtga

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