KEGG T04015: Lokiarch

Candidatus Lokiarchaeum sp. GC14_75: Lokiarch_43500

Entry

Lokiarch_43500    CDS       T04015

Symbol

gyrB_1

Name

(GenBank) Topoisomerase IIA (DNA gyrase/topoisomerase IV), B subunit

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

loki Candidatus Lokiarchaeum sp. GC14_75

Brite

KEGG Orthology (KO) [BR:loki00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:loki03032]
    Lokiarch_43500 (gyrB_1)
   03400 DNA repair and recombination proteins [BR:loki03400]
    Lokiarch_43500 (gyrB_1)
Enzymes [BR:loki01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Lokiarch_43500 (gyrB_1)
DNA replication proteins [BR:loki03032]
Prokaryotic type
  DNA Topoisomerases
   Lokiarch_43500 (gyrB_1)
DNA repair and recombination proteins [BR:loki03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Lokiarch_43500 (gyrB_1)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c TFIID_NTD2

Other DBs

NCBI-ProteinID:

KKK41380

AA seq 669 aa
MPSKKNSTYDADDIQVLKGLDGVRKRPAMYIGDTGKRGLHHLIFEVLDNSVDEAMGGYAD
EISVTLYKDNSVLVVDNGRGIPIDEHPEFKRPALEVIMEHLHAGGKFDNKSYKISGGLHG
VGLSVVNALTEWMNVEVVRDGFCYKQKFSKGKKASDPEITEVETEKSYTKITFYPDNSIF
EFDPNEPIYNSHTIIARMRELAFLTPHTRFEIFDNFKDEQEEFHYEGGIKEFITYLNKDR
QPLHSDIIYINDSYTTDDGSVIMCEIAAQYNQGFQTHILSYANTINTVEGGVHLTGFKSA
LTRGFNAYIENFMEKKYKEHVLSGTDTREGLSAIISVKLPDPQFESQTKIKLGNPEIRQI
VSQMVSNKLTQYLEENPQTAKRIVMKTINAKIAREAAQKARMLIRRKSALDSARLPGTLA
DCSSNKPEECELFIVEGPSAGGSAKQGRDRNYQAILPLKGKILNVEKARMEKIYQNNEIR
AITKVLGVGFQESNDLGENDKEDDDENGNKFNLDKLRYHRVIIMCDADVDGFHIETLLLT
FFFRHMRPLIDEGHLFIACPPLHKVSYKKNKIYVFSDKEKDQRIQEFKTKYNLKDASSIK
VQRYKGLGEMNADELYETTMRKESRKLKRVTYEDYLENDLMFTRLMGKEVKARKKFIFKN
FAEVNMLDI

NT seq 2010 nt +upstreamnt +downstreamnt
atgcctagtaaaaaaaattccacttatgacgctgacgatattcaagttctaaagggttta
gacggtgtgcgtaaaagacctgctatgtacataggagacacaggaaagagaggcctccac
caccttatatttgaagttcttgataactcagtggatgaggcaatgggaggatacgcagat
gaaatttcggtaaccctttataaagataattctgttttggttgtagataacggacgagga
attcccatagatgagcatcccgagtttaaaagacctgctcttgaagtcattatggagcat
ttgcatgctggtgggaaatttgacaataaaagttataaaatctcaggcggtttacatggt
gttgggctttcagttgtgaatgcattaactgaatggatgaatgtagaagtcgttcgggat
gggttttgttataagcagaaattttcaaaaggaaaaaaagcaagtgatcctgaaataaca
gaagtcgaaacagagaaatcttacacaaaaatcaccttctatcctgataattcaattttt
gaatttgatcctaacgagccgatatataattcgcacactattattgctagaatgcgagaa
cttgcgtttcttacacctcatacaaggttcgaaattttcgataattttaaggatgaacaa
gaggagttccattatgaaggggggataaaggaatttatcacgtatctaaataaggataga
caacccttacatagcgatatcatttatataaatgattcctacaccacagatgatggttct
gtgataatgtgtgaaatcgcagcccaatataatcaaggatttcaaacacatatcctctct
tatgctaacacaattaacacagttgaaggtggtgtacacctaactggatttaaatccgcg
ttaacaagaggatttaatgcttacatagaaaactttatggaaaagaagtataaggagcat
gttctgagtggaaccgacacacgagaaggactctcagcaataatttccgtgaaacttccc
gatcctcaatttgagagtcagacaaaaatcaaactaggtaatcctgaaattcgccagatt
gtcagtcaaatggtttcaaataaattaactcaatatctagaagaaaatcctcagactgcc
aaacgaatcgttatgaagactattaatgctaaaatagcacgtgaagcagctcaaaaagct
agaatgctaatccggagaaaatccgccttagatagtgctaggttgccagggacacttgct
gattgttcttcaaataaacctgaagagtgtgagttgtttatagtagaaggtccttcagca
gggggatctgctaagcaagggagagatagaaactaccaagcaattctccctctaaaagga
aagattttgaatgtagaaaaggctcgaatggaaaaaatctatcagaacaatgaaattaga
gctataactaaagtattaggtgttggctttcaagaatcaaatgatctaggtgaaaacgat
aaagaagacgatgatgagaatggtaacaaatttaatttagacaagctaaggtaccatcgc
gtcataatcatgtgcgacgctgatgtagatggcttccatatagaaacattattacttaca
ttctttttccggcatatgcgccctttaattgacgaaggacacttatttattgcttgccca
ccattgcataaagttagttataaaaaaaataaaatatacgttttttcagataaggaaaaa
gatcaacgtattcaagaatttaaaacaaaatacaacttaaaagacgcttcttcaatcaaa
gttcaaagatacaaaggattaggtgagatgaatgcagatgaactctatgaaacaacaatg
aggaaagaatcacggaagttaaagagagtaacctatgaagattatctagaaaatgattta
atgttcacaagacttatgggtaaggaagtaaaagcccgaaaaaagtttatttttaaaaat
tttgccgaagttaacatgctagatatttaa

All links

Gene (13)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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