KEGG   Lonchura striata (white-rumped munia): 110482373
Entry
110482373         CDS       T05897                                 
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
  KO
K23113  structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
lsr  Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lsr03036]
    110482373 (SMCHD1)
   03400 DNA repair and recombination proteins [BR:lsr03400]
    110482373 (SMCHD1)
Chromosome and associated proteins [BR:lsr03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110482373 (SMCHD1)
DNA repair and recombination proteins [BR:lsr03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     110482373 (SMCHD1)
SSDB
Motif
Pfam: SMCHD1_S5 Ig_SMCHD1_1st Ig_SMCHD1_8th Ig_SMCHD1_5th Ig_SMCHD1_6th Ig_SMCHD1_2nd Ig_SMCHD1_7th Ig_SMCHD1_4th SMC_hinge HATPase_c_3 HATPase_c Big_1
Other DBs
NCBI-GeneID: 110482373
NCBI-ProteinID: XP_021407246
Position
2:complement(103181542..>103250281)
AA seq 2151 aa
APAAPGGGSGARRGALTHSEVAVPERRFCFQALPTRLPSAPSHHTARPAAQPSLSLSFPP
SHRLLPGLHGASFPGFRAGSASCFPGRDGFCRAGALAGPVAGAVAAAIAEGRFQSPPLPN
MAAAAGSGRSPRRPALLTPRGNGDRTVFLFDRRREQADPDEKVLSYGTDSYRAFRSAVCQ
AFGIPSDETFVITTTNRKEITEDNFSNLVHNGVTLYLLQSVDQMLLLATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSQNTGIRSIQIKLLFDDSQGKPAVAV
IDNGSGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQCARMISKPAASQDVHELVLSKEDFEKKEKNKEAIYTGFIQNRKPSDSTHITSDD
ERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNET
KAVTKEISPFNNIDIEISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEEEG
IVEGIIRYHPFLYDKETYPDDPCFPSRLNDDDDDDCFLVEKGARGKRPIFECFWNGRLIP
YTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITIRTDVSSKRMQSPWTMYAA
IEWDGKTYRTGQLVKTTKTHPIFYGSIEKFYLYGDHDGDIFATGGEVQIALEPQALYGEV
KIIPISKLDRTVSDKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGPLRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTENKEIISHISQHGGKWPYWFKKMEN
LQKLGNYSLKLQVVLNESNADTYAGRPLPSKVFKFTIIEGKPEKFLVGLLELPFRIGVPF
SIPLELQDEFGHATHLTNRIRPILEASGLTLKHEDIPVAAKCVIKGVTAKGCVNSCQGKN
FNLKITLPGLKEDTQVIKIRLQPGPPRQLKVKPDSEILKIENGTAFPFQVEVLDESGNIT
AQPQLIVQCEFLGASDLPVYSVDCSNGGTNILTGPVIHVQNIKKDQMLKARFEVLNCKDV
PPVEKIIKLLPSSHVARLQVLSMNGQKALQIKHQDEISCVAGQVMNKLIFQMYDEAEREI
PITAAAAEKVKVNWTPQIDRELLMQGLLPDVKVPTSVKDVRYCLITYLDEHVSLESAFTV
RPVPDEPKHIKCKLKGSNTLQMGEELQSEIDVMITDQFGNQVQTVTSACVNSLGVSGPGL
DKSNLKVTWQESTQTMKVKGIRYKPCLLGSKELCFAWREFSDFIRVNLIAGSPAKLQFVD
WPELEKPVAVINGRELQRPLIVQLCDQWGNPAPEPNVKISLTKSNNLKLMPSNQQHKTDD
TGRANLGVFSIHAPRGEHILQVKASYNKAILDCLVITINVLPDPEKPVCLNVKYDKSPSF
PAGGTFPDFMVSVLSEDDTIIKNINPARITMKMWEAQSSRVRTPIDVITFSCSKVKDDKE
DGFFYFRDKVVPERVGTYIIQFTFAMDKINMLNSEQIIIQVVPNDPVRLLPDSLPATPAV
SNVRALTSRTLVKDLYLHLMDEYNNHTGLDLAGRIIAKIKSPNEEDIEIPQFQGKVSTVE
FPLESGSAEINLVLAEDSPGRDSTEYILVFEPHLPALKKPLEPYCLSFMFYNDSKKQQLM
ATLTREKDQLSKSIDLYRKMFDTTNQLVTEMKCQVKEAESREALLKNELKKHQIELPQTN
ILQYVDSLLKKKMLEQEGVMKQPRRTCTLPNYPKGSQDILGKIAHLAQIEDNEAAKVISW
HLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLKNGRTFFRP
IGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTISVQIDLLQQYRAAVIKFDSVN
KDLDLHLQSLNTPEMQKKKQELAEQEKSLKLVKQKLGMTAALSDKGAESLLQPIMLDISD
TPIPPKRMRKDTLKKLYSPEEWISSPGKQQQQQVLQMASSELNGTPRKRKA
NT seq 6456 nt   +upstreamnt  +downstreamnt
gctcctgccgcacccggcggcggaagtggcgcgaggcggggggcgctgactcattccgag
gtcgcggtgccggagcggcgcttttgtttccaggcgctccccacccgcctgcccagcgcc
ccctcgcaccacaccgcacggccagcagcgcagccgtcgctctccctctctttccctccc
tcccatcgtctccttccggggctccacggcgcctccttccccggcttccgtgccggctcc
gcctcctgcttccccggccgggacggcttttgccgggcgggggcgctggcggggccggta
gcaggagccgtcgctgccgccatcgctgagggacggtttcagtctcctccgctccccaac
atggcagcagcggcggggagcggtcgctcacctcgcaggccggcgctgctgacccctcgc
ggcaacggggaccgcaccgtgttcctcttcgaccgacggcgagagcaggcggacccggac
gagaaagtgctcagctacggcacggacagctaccgcgctttccgcagcgccgtctgccag
gcatttggcataccttctgatgaaacctttgtaatcaccacaacaaataggaaggaaatt
acagaagataacttcagcaaccttgttcacaatggagttactttatatctgctacagtca
gttgatcaaatgttgcttttggcaaccaaggaacgaatcgactttctgccccactacgac
acacttgtcaaaagtggcatgtacgagtactatgccagcgagggccaaaatcctttgcca
tttgcccttgctgaattgattgacaattctctgtcagctacatctcaaaatactggtatt
cggagtatacagataaaattgctgtttgatgattcccaaggaaaaccagctgttgctgtg
attgataatggaagtggaatgacttctaaacagcttaacaactgggctgtatatagatta
tcaaagtttacgagacaaggtgactttgaaagtgatcattcaggatatgtacgccctttg
ccagtgcctcgtagtttaaatagtgatatctcatattttggagttggaggcaagcaagca
gtgttcttcgtgggacagtgtgccagaatgataagcaaacctgcagcatctcaggatgtt
catgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaata
tatactggattcattcaaaacagaaagccatctgattctactcacatcacaagtgatgat
gaaagatttcttcataatctaatattagaagaaagggataaagagagtttcacagcagtt
gtcattacaggtgtacaaccagatcacatgcagtacttgaaaaactacttccatctttgg
acaaggcagctggcacacatctatcactattatatccatggaccaaaaggaaatgaaact
aaagctgtaacaaaagaaataagccctttcaacaacatcgatattgagatttcaatgttt
gaaaagggaaaagtaccgaagattgtcaatctgagggagatcaaagatgacatgcagaca
ttgtacataaacactgcagcagatagttttgagttcaaggcacatgttgaagaagaaggt
atcgttgaaggcatcatccgataccatcccttcctgtatgataaagaaacataccctgat
gatccatgttttccatcaagattaaatgatgatgatgacgatgactgttttttagtagaa
aaaggtgccagaggaaaaaggcctatttttgaatgtttttggaatggaaggttaatacca
tacacaactgtggaagattttgactggtgcgctcctccaaagaagagaggattggcacca
attgaatgctacaacagaatttctggtgcattgtttaccaatgataagttccaggtcagc
acaaacaaactcactttcatggatctggagctgaagctaaaggataagaatactctgttc
acaagaatcttcaatggtcaggagcagcgaatgaaaattgacagagaatttgctctgtgg
ctcaaagactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggaata
actatacgtactgatgtatcatccaaaagaatgcagagcccttggacaatgtatgctgca
atagagtgggatggaaaaacatacagaactgggcagctggtgaaaactactaagactcat
ccaatattctatggaagcattgagaaattttacttgtatggggaccatgatggggatata
tttgccactgggggagaggttcaaattgctttggaaccgcaggcattgtatggtgaagtg
aaaattattccaatctcaaaacttgacagaacagtgtctgacaaagctgttaaaaaatac
atagaagatgaaatggcaagacttcctgacaaattatcagtaacatggcctgaaggagat
gagttattaccaaatgaaacaagatttgctggtacaccaataggaccattaagaatagaa
attttaaataaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttca
aagaaacttcttgttgaactcaaggttattttgcattcccctactgagaataaagaaata
atttcccatatcagtcagcatggaggcaagtggccatactggtttaaaaaaatggaaaat
cttcagaagcttggtaactactcattgaaactgcaagtagtgttgaatgaaagtaatgca
gacacatatgcaggaaggcctctgccatctaaagtatttaaatttactattatagagggc
aaaccagagaaatttttggtgggtctcttggagcttccttttcgaattggagtgcctttt
agtattcctttggaattgcaggatgaatttggtcatgccacacacttgacaaatcgcatt
agaccaattctggaagctagtggattaacactgaagcatgaagacatacctgtggcagca
aagtgtgtcattaagggtgttactgctaaaggctgtgtaaatagttgccagggcaagaac
tttaatctgaagattactcttcctggtttgaaagaagatacacaagtcattaaaataaga
ttgcagcctggccctcctcgtcaattgaaagtaaaaccagattcagaaattctaaagatt
gaaaatggtacagcttttccctttcaggttgaagtactggatgaatcaggaaatataaca
gcacagccacagttgattgttcagtgtgagtttttaggtgcttcagaccttcctgtgtat
tctgttgactgcagtaatggaggaacaaacattttaactggtccagttatacatgtacag
aatatcaagaaagaccagatgttgaaagcaaggtttgaagtacttaattgcaaagatgtg
ccaccagtggaaaagattataaaacttctccctagcagtcatgttgcaagactacaggtc
ttaagtatgaatggacaaaaagctcttcagattaaacatcaggatgaaattagttgtgtt
gctggccaagtcatgaacaaacttatatttcagatgtatgatgaagcagaaagggaaata
cccataactgcagctgctgcagaaaaggtcaaggttaactggacacctcaaattgacaga
gagctgttgatgcagggattattacctgatgtaaaagtaccaacttcagtaaaagatgtg
cgttactgcctaattacttacctcgatgagcacgtgtctttggaaagtgcattcacagtc
agaccagttcctgatgaacccaaacacattaaatgtaaactaaaaggctcaaacacactg
cagatgggtgaagaactgcagagtgaaatcgatgtaatgattacagatcagtttggaaat
caggttcagacagtgacatctgcatgtgtaaattccctaggagtttctgggcctggactt
gataaatcaaatttgaaagtaacttggcaggaaagtactcaaacaatgaaagtaaaaggt
attagatataaaccctgtttacttggaagcaaagaattgtgctttgcttggcgtgaattt
tctgactttatcagagtgaatttaatagcaggatccccagctaaattgcagtttgttgat
tggccagagttagaaaagcctgttgcagtgattaatggtagagaattgcagaggccccta
attgttcagttgtgtgatcagtggggaaatccagctcctgaacctaatgtcaaaatcagc
ctcacaaagagtaacaacttaaagcttatgccttcaaaccagcagcataaaacagatgat
actggtagggctaacctgggagtttttagtattcatgcacctagaggagagcacatttta
caggttaaagcctcatacaacaaggccatattagattgtcttgtaatcacaataaatgtc
ctgcctgatcctgagaaacctgtctgcctgaatgttaaatacgacaaaagtccttctttt
ccagcaggaggtacctttcctgattttatggttagtgttctttctgaagatgacaccatt
attaaaaatattaatccagcacggattactatgaaaatgtgggaagcacagagcagccgg
gttaggacaccaattgatgttataacgtttagctgtagtaaagtgaaggatgacaaggag
gatggcttcttctacttcagggataaagtggttccggagcgagtgggcacttacatcatc
cagtttacctttgctatggataagataaatatgctcaacagtgaacagattataattcaa
gttgtacctaatgaccctgtacgcttgttacctgattctttgccagctactccagcagtt
tccaatgtccgagctcttaccagccgtacactggtcaaggatttatacctccatttaatg
gatgaatacaacaaccacactggacttgatctagctggcaggataatagcaaaaattaaa
agccctaatgaagaagatatagagatcccgcagtttcaggggaaagtcagtacagtagag
tttccattggagagtggatcagctgaaattaatttagtgctggctgaagacagtcctgga
agagatagcactgaatatattcttgtctttgagccacatctgccagctttgaaaaaacct
ttggaaccatattgtctctcctttatgttttacaatgattccaagaaacagcagctgatg
gcaacactgaccagggagaaagaccaattatccaagtccatagatctttacagaaagatg
tttgatacaacgaatcagctcgtaactgaaatgaaatgtcaggttaaagaagctgaatca
agagaagctctcctgaagaatgaactgaaaaagcaccaaattgaattaccacagacaaac
atacttcagtatgtggattctcttctgaaaaagaagatgttggaacaagagggagtaatg
aagcagccaaggagaacttgtaccctcccaaactatccaaaaggcagccaggatattcta
ggcaagattgcacatttagctcaaattgaggataacgaagcagcaaaagtcatctcttgg
cacttggcaagtgacatggactgtgtagtcacactgaccacggaagccgctcggtctatc
tttgatgaaactcaaggtcgacagcaagtgctaccccttgattctatttacaagaagaca
cttccagattggaacagacctttacctcacttgaaaaatggaagaactttcttcagacct
attggaaatcctgtatttgccagagatttgttaacatttccagataacgtagagcattgt
caaacagtgtttggtatgctcttgggtgatactatcattatagataacttggatgctgcc
aaccactacagaaaagaggttgtaaaaattacacactgccctacattgctgactagggaa
ggagacaggattcgcagcaatggaaaatttggaggcctgcagaataaagctcctccaatg
gacaaactcagaggaatggtatttggagcaccaatgccaaaactttactctactatctct
gtacagatagatcttcttcagcaataccgtgcagcagtgattaaatttgatagtgtgaat
aaggaccttgatttacatttgcagtcactgaacactccagaaatgcaaaagaaaaaacag
gaacttgctgaacaagagaaaagcctcaagctagtaaaacaaaaattgggtatgactgct
gctttatcagataaaggtgctgaatcattacttcagcctataatgttagatatatctgac
acgcccattcctcccaaaagaatgcgaaaagacacactgaagaaactgtatagcccagaa
gagtggatctcctctcctggaaagcagcagcaacagcaagtgttgcaaatggcctcttca
gaacttaatggaactccacggaaaagaaaggcatag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (16)   

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