KEGG   Lactuca sativa (garden lettuce): 111907941
Entry
111907941         CDS       T05352                                 
Symbol
LOC111907941
Name
(RefSeq) nuclear poly(A) polymerase 4 isoform X1
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    111907941 (LOC111907941)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111907941 (LOC111907941)
Enzymes [BR:lsv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     111907941 (LOC111907941)
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     111907941 (LOC111907941)
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 MTPAP-like_central Nrap_D2
Other DBs
NCBI-GeneID: 111907941
NCBI-ProteinID: XP_023759521
Position
4:complement(177324773..177329577)
AA seq 594 aa
MVGSEALPSPRQHGVTKPLSLAGPSDADLLRTKKLNKFLVDAGLYESKEEAAKRVEVLGR
IKQIVVDWVKQLTRLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNRD
DFFFVLHDMLSGMEEVTELQPVPDAHVPVMKFKFDGICIDLLYASISVLVVPDDLDISDD
SVLYDVDEPTVRSLNGCRVADQILKHVPNVEHFRTTLRCLKFWAKKRGVYSNVTGFLGGV
NWALLVARVCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIQQQELGFAVWDPRKNPK
DRTHHMPIITPAYPCMNSSYNVSTSTLRVMTEQFLFANTICQEIEVNKAQWHALFEPYMF
FESYRNYLQVDIVAGDCDDLRAWKGWVESRLRQLTLMIERDTMGKLQCHPYPHEYSDPSK
QCSHSAFFMGLQRKQGEVVLEGQQFDIRKTVDEFRHSVNMYVFWRPGMEIYVSHVRRKQI
PLYVFPEGCRIPRSNIIHPSSEEEASRKRKLEAIGNGMKQDGLPKRQSVSPRNRDSDSDS
VSPVIVNHSCAEEGKRNVFEVQVLPKGLELVVSSRPVVELEQGTVIRLGVTSTA
NT seq 1785 nt   +upstreamnt  +downstreamnt
atggtgggttcggaggctttaccttcaccaaggcagcacggggttacgaaacccttgtct
ctagcgggaccatctgacgctgatttactaagaaccaagaaattgaacaagttcttggta
gatgctggactatacgaaagcaaagaagaagccgctaagagggtggaagttcttggtcga
attaagcagattgtagttgattgggtgaagcaacttactcgcttacgtggctatacagac
caaatggttgaagatgcaaatgctgtcatctttacttttggttcatatcgacttggagtt
catggtcctggagcagacattgacactttatgtgtagggccttcttatgtgaatcgagat
gacttcttttttgtattgcatgatatgttgtcaggaatggaggaagttacagaacttcaa
ccagttccagatgctcatgttccagtcatgaaatttaaatttgatggaatttgtattgat
cttctttatgccagcatttctgttttagttgttccagatgatctagacatatctgatgat
tctgtcttgtatgatgttgatgagcctactgtgaggagtcttaatggttgcagggttgct
gatcagattcttaaacatgttccaaatgttgagcattttcgtacaacacttcgttgcttg
aagttttgggctaaaaagcgtggagtttattcaaatgtgactggatttctaggtggtgtg
aattgggctcttcttgttgcacgagtttgtcaattttacccaaatgccattccaagtatg
ctggtttcaaggttctttagggtctacacacagtggcgttggccaaacccagtcatgctc
tgttcaatccaacaacaagagctcggattcgccgtgtgggacccacgcaaaaaccctaaa
gacagaactcaccatatgcccattattacccctgcatacccctgcatgaactccagctac
aatgtctccactagcacgctccgtgtcatgactgaacagttcctcttcgccaatacaata
tgccaggaaatagaagtcaacaaagcccagtggcatgcattgtttgaaccatatatgttc
ttcgaaagctacagaaattatttacaggtggatatagttgctggagattgtgatgatctt
cgtgcatggaaaggttgggttgaatcgcgtttgaggcagttgactttaatgattgagagg
gatacgatggggaagctgcagtgtcatccatacccacatgaatactcagacccttcaaag
caatgttcacacagtgctttcttcatggggttacagaggaaacaaggggaagtggttcta
gaaggtcaacagtttgacatcagaaaaacagttgatgagtttagacattcggtcaacatg
tatgtgttttggaggcccggaatggaaatctatgtttcccatgtcagaagaaaacagatt
cctttgtatgtgtttccggaaggttgtagaatacctaggtcaaacatcatccatccatca
agtgaagaagaagcttctagaaagagaaaattagaagcaattggaaatggaatgaaacaa
gatggtttaccgaaaagacaatccgtgagtccccggaatcgcgattccgattccgattcc
gtttcccctgtcattgttaatcattcgtgtgctgaagagggtaaacggaacgtgtttgaa
gttcaggttttgccgaagggacttgagttggtggtgagttcgcgaccggttgttgagttg
gaacagggaacggttataaggttaggtgtgacatcaacagcttga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (8)   
   RefSeq(pep) (8)   
DNA sequence (12)   
   RefSeq(nuc) (8)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system