KEGG   Limimaricola variabilis: T8T21_12240
Entry
T8T21_12240       CDS       T09625                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
lvr  Limimaricola variabilis
Pathway
lvr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lvr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    T8T21_12240 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lvr03019]
    T8T21_12240 (pnp)
   03016 Transfer RNA biogenesis [BR:lvr03016]
    T8T21_12240 (pnp)
Enzymes [BR:lvr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     T8T21_12240 (pnp)
Messenger RNA biogenesis [BR:lvr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     T8T21_12240 (pnp)
Transfer RNA biogenesis [BR:lvr03016]
 Prokaryotic type
  tRNA degradation factors
   T8T21_12240 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 S1_RRP5 KH-I_KHDC4-BBP
Other DBs
NCBI-ProteinID: WPY96077
Position
complement(2453491..2455623)
AA seq 710 aa
MFHDVKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFAKAPKPGQDFFPLT
VHYQEKYYAAGKIPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDVVAMIAASAALTISGAPFMGPIAGARVGFVDGEYVLNPTVDDMQNLRSNPEQR
LDLVVAGTKDAVMMVESEAYELTEEEMLGAVNFAHEQIQPVIDLIIDLAEETAKEPFDFT
PPDYAALYDAVKAAGEEKMRAAFAITDKQERTAAVAAAREAIKAQLTEEQLGDENLGSAL
KKLESSVLRGDVVKKGKRIDGRNLDTVRDIVAETGLLPRTHGSALFTRGETQALVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPLKSAVAGVAMGLVLEDDGSYA
VLTDILGDEDHLGDMDFKVAGTAEGITSLQMDIKVAGITPEIMRKALAQAKDGRMHILGE
MNKALSGAAEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKI
ASANGEAIQKAYDMIYSIVAEPEEGKVYKGTVVKLVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKVVNQETGEEAKEDAQAE
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgtttcacgacgtgaaaaaatcgatccagtggggcgaagagacgctgacgctggaaacc
ggcaaggtcgcgcgccaggccgacggctcggtcatcgcgacgctgggcgaaaccagcgtg
atggccaacgtcaccttcgccaaggcgccgaagccgggtcaggacttcttccccctgacc
gtccactaccaggaaaaatactacgccgccggcaagatcccgggcggcttcttcaagcgc
gaggcgcgcccgaccgagaaggagacgctgaccgcgcgcctgatcgaccggccgatccgc
ccgctcttcgtgccgggcttcaagaacgaagttctggtgatgtgcaccgtgctgagccac
gacctcgtcaacgaccccgacgtcgtcgcgatgatcgcagcctcggccgcgctgacgatc
tcgggcgcccccttcatgggcccgatcgccggcgcccgcgtcggcttcgtcgatggcgaa
tacgtgctgaacccgaccgtcgatgacatgcagaacctgcgctcgaaccccgagcagcgc
ctcgacctcgtggtcgccggcaccaaggacgcggtcatgatggtcgagtccgaggcctac
gagctgaccgaggaagagatgctcggcgccgtgaacttcgcgcatgagcagatccagccg
gtcatcgacctgatcatcgatctggccgaagagaccgccaaggagcccttcgacttcacc
cccccggactacgcggcgctctacgacgccgtgaaggccgccggcgaggagaagatgcgc
gccgccttcgcgatcaccgacaagcaggagcgcaccgccgccgtcgcggccgcgcgcgag
gcgatcaaggcgcagctcaccgaagagcagctcggcgacgagaacctcggctcggcgctc
aagaagctcgaatcgagcgtcctgcgcggcgacgtggtcaagaagggcaagcggatcgac
ggtcgcaacctcgacaccgtccgcgacatcgtggccgagaccggcctgctgccgcgtacc
catggctcggcgctgttcacccgcggtgagacccaggcactggtggtgaccacgctcggc
accggcgatgacgagcagttcatcgacgcgctgcacggcaacttcaaatcgaacttcctg
ctgcactacaacttccccccctactcggtgggcgaagtgggccgcgtcggctccccgggc
cgtcgcgagatcggccatggcaagctcgcctggcgggcgctgcaggcggtgctgccggcg
gcgaccgacttcccctacacgatccgtctcgtttcggagatcaccgaatcgaacggctcc
tcctcgatggcttcggtctgcggcggctcgctcgccatgatggatgccggcgtgccgctc
aagagcgcggtcgcgggtgtggccatgggcctcgtgctggaagatgacggctcctacgcc
gtgctgaccgacatcctgggcgacgaggaccacctcggcgacatggacttcaaggtcgcc
ggcaccgccgagggcatcacctcgctgcagatggacatcaaggtcgcgggcatcaccccc
gagatcatgcgcaaggctctggcgcaggccaaggacggccggatgcacatccttggcgag
atgaacaaggcgctctccggcgcggccgagttctcggtccacgcgccccgcatcgagacg
atgcagatcccgaccgacaagatccgcgaagtgatcggctcgggcggcaaggtgatccgc
gagatcgtcgaggtctcgggcgccaaggtcgacatcaacgacgacggcgtgatcaagatc
gcctcggccaatggcgaggcgatccagaaggcctacgacatgatctactcgatcgtggcc
gagcccgaggaaggcaaggtctacaagggcaccgtggtcaagctcgtcgacttcggcgcc
ttcgtgaacttcttcggcaagcgcgacggcctcgtgcatgtcagccagatcgagaaccgc
cgcctgaaccacccctcggacgtcctcaaggagggccaggaggtctgggtcaagctgctg
ggcttcgacgatcgcggcaaggtgcgtctgtcgatgaaggtcgtgaaccaggagactggc
gaggaagccaaggaagacgcgcaggccgagtga

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (8)   

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