KEGG T05661: D7I47

Protaetiibacter intestinalis: D7I47_10465

Entry

D7I47_10465       CDS       T05661

Symbol

ligA

Name

(GenBank) NAD-dependent DNA ligase LigA

K01972

DNA ligase (NAD+) [EC:6.5.1.2]

Organism

lyd Protaetiibacter intestinalis

Pathway

lyd03030

DNA replication

lyd03410

Base excision repair

lyd03420

Nucleotide excision repair

lyd03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:lyd00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    D7I47_10465 (ligA)
   03410 Base excision repair
    D7I47_10465 (ligA)
   03420 Nucleotide excision repair
    D7I47_10465 (ligA)
   03430 Mismatch repair
    D7I47_10465 (ligA)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lyd03032]
    D7I47_10465 (ligA)
   03400 DNA repair and recombination proteins [BR:lyd03400]
    D7I47_10465 (ligA)
Enzymes [BR:lyd01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     D7I47_10465 (ligA)
DNA replication proteins [BR:lyd03032]
Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     D7I47_10465 (ligA)
DNA repair and recombination proteins [BR:lyd03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     D7I47_10465 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     D7I47_10465 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     D7I47_10465 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      D7I47_10465 (ligA)

SSDB

Motif

Pfam:

DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT HHH_5 HHH Nlig-Ia PTCB-BRCT

Other DBs

NCBI-ProteinID:

AYF99553

UniProt:

A0A387BB35

Position

2215923..2218244

AA seq 773 aa
MEQVPEATRTSLQRAHAEAEALTARILELREAYYERDTSLVDDAEYDGLIHRLEELERLF
PELQSQDSPTQTVGGGTETSGLATIVHAERMLSLDNVFSADELREWCVKTADAAGRPVHW
LTELKIDGLAINLRYEHGVLTSAATRGDGRTGELVTENALRLADVPERLSGTGHPALVEV
RGEVFIPVKAFERLNALQAELRERAFAESEERSKGRAGAFDEQKARASAARRFPAFANPR
NAASGGLRQQLDKKDGLELEAALARVGSLRLYVHGIGAWPDPPVASQSEIYGLLEGWGLP
TTPYSRVSPDVDGVIAYVEHYGEHRHDVEHEIDGIVVKVDELALHDELGATSRAPRWAIA
YKYPPEEVQTTLLDIVVSIGRTGRATPFAVMAPAHVSGSTVRQATLHNQDVVKAKGVLIG
DTVVLRKAGDVIPEVLGPVVEKRDGTEREFVMPADCPECGTPLAPAKEGDVDLRCPNARA
CPAQVRGRVEHIGSRGALDIEGLGEVGAAALTQPEIPRPAPLETEAGLFDLTLEQLMPIE
VVVRDVETGERKTLPDGSYDLRTPFRKIVQHARKDHPAVEGPSEVAKTLLDELEKAKTKE
LWRFLVALNIRHVGPVAARALADWFGSLDAIRGATREELAAVDGVGGIIADAVLDWFTID
WHVDIVERWAAAGVQWATPGHPGPGNAAAADGPLAGLTVVATGALEGYTREGAQEAIIRA
GGKAASSVSKKTDFVAAGPGAGSKLTKAEELGVRIIDAAQFRILVEQGPAALD

NT seq 2322 nt +upstreamnt +downstreamnt
gtggagcaggttccggaggcgacgcgcacctcgctgcagcgggcgcacgcggaggccgag
gcactgaccgcccgcatcctcgaactgcgcgaggcgtactacgagcgcgacacgagcctc
gtcgatgacgccgagtacgacggcctcatccaccgcctcgaagagctcgagcgactcttc
cccgagctgcagagccaggactcgcccacccagaccgtcggcggcggcaccgagacgagc
ggcctcgccacgatcgtgcacgccgagcgcatgctgagcctcgacaacgtcttctccgcc
gacgagctgcgcgagtggtgcgtcaagaccgcggatgccgcgggccgccccgtgcactgg
ctcaccgagctgaagatcgacgggctcgcgatcaacctgcgctacgagcacggcgtgctc
acgagcgccgccacccgcggcgacggccgcacgggcgagctcgtcaccgagaacgcgctg
cggctcgcggatgtgcccgagcgtctctcgggcacgggtcaccccgcgctcgtcgaggtt
cgcggcgaggtgttcatcccggtgaaggccttcgaacggttgaacgccctgcaggcggag
ctgcgcgagcgcgccttcgccgagtccgaggagcggtcgaagggccgcgcgggcgccttc
gacgagcagaaggcccgcgcctcggccgcgcggcggttcccggcgttcgccaacccgcgg
aatgcggcatccggagggctgcgccagcagctcgacaagaaggacggcctcgaactcgag
gcggccctcgcccgcgtcgggtcgctgcggctgtacgtgcacggcatcggcgcctggccc
gacccgcccgtcgcctcccagagcgagatctacggcctgctcgagggctggggcctgccc
accaccccctacagccgcgtgagtcccgacgtcgacggcgtcatcgcctacgtcgagcac
tacggcgagcaccgccacgacgtcgagcacgagatcgacggcatcgtcgtgaaggtcgac
gagctcgccctgcacgacgagctgggcgccacgagccgcgccccgcgctgggccatcgcc
tacaagtacccgcccgaggaggtgcagacgacgctgctcgacatcgtcgtctcgatcggc
cgcaccggccgcgccacccccttcgccgtcatggcgcccgcgcacgtctccggttcgacc
gtgcggcaggcgaccctgcacaaccaggacgtcgtgaaggcgaagggcgtgctcatcggc
gacacggtcgtgctgcgcaaggccggggatgtcatccccgaggtgctggggcccgtggtc
gagaagcgcgacggcaccgagcgcgagttcgtgatgccggcggactgccccgagtgcggc
accccgctcgcgcccgccaaggagggcgacgtcgacctgcgctgcccgaacgcgcgcgcc
tgccccgcccaggtgcgcggtcgcgtcgagcacatcggatcgcggggtgcgctcgacatc
gaggggctcggcgaggtgggggccgccgcgctcacccagcccgagatcccgcgccccgca
ccgctcgagacggaggcggggctcttcgacctgaccctcgagcagctcatgccgatcgag
gtggtggtgcgcgacgtcgagaccggcgagcgcaagacgctgcccgacggctcctacgac
ctgcgcaccccgttccgcaagatcgtgcagcacgcccggaaggaccaccccgcggtcgag
ggcccctcggaggtcgcgaagacgctgctcgacgagctcgagaaggcgaagacgaaggaa
ctgtggcgcttcctcgtggccctcaacatccggcacgtcggccccgtcgcggcgcgtgcc
ctcgccgactggttcggctcgctcgacgccatccgcggcgccacccgcgaggagctcgcg
gcggtcgacggcgtcggcgggatcatcgcggatgccgtgctcgactggttcacgatcgac
tggcacgtcgacatcgtcgagcgctgggcggccgccggcgtgcagtgggcgacgccgggg
catcccgggccgggcaacgcggcggcggccgatgggccgctcgcggggctcaccgtggtg
gccaccggcgccctcgagggctacacgcgcgagggcgcgcaggaggcgatcatccgcgcg
ggcggcaaggccgcctccagcgtgagcaagaagacggacttcgtggccgcgggcccggga
gccggctcgaagctgacgaaggcggaggagctgggggtgcgcatcatcgacgccgcccag
ttccgcatcctcgtcgagcaggggcccgccgcgctcgactga

All links

Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (11)   

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