KEGG T10748: NV349

Lysinibacillus sp. OF-1: NV349_15695

Entry

NV349_15695       CDS       T10748

Symbol

recJ

Name

(GenBank) single-stranded-DNA-specific exonuclease RecJ

K07462

single-stranded-DNA-specific exonuclease [EC:3.1.-.-]

Organism

lyo Lysinibacillus sp. OF-1

Pathway

lyo03410

Base excision repair

lyo03430

Mismatch repair

lyo03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:lyo00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    NV349_15695 (recJ)
   03430 Mismatch repair
    NV349_15695 (recJ)
   03440 Homologous recombination
    NV349_15695 (recJ)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lyo03400]
    NV349_15695 (recJ)
DNA repair and recombination proteins [BR:lyo03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     NV349_15695 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     NV349_15695 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NV349_15695 (recJ)

SSDB

Motif

Pfam:

ssDNA-exonuc_C RecJ_OB DHHA1 DHH V_ATPase_prox

Other DBs

NCBI-ProteinID:

WCH46527

Position

complement(3208481..3210502)

AA seq 673 aa
MLNVLLDLGADVSFKIPNRFIHGYGPHEALFREAYEEGVQLIITVDNGISGIEPVRVAKE
LGMDVIVTDHHEPGEELPPADIILHPRLPEGHYPFGELAGVGVAFKLAHALYGELPIHLM
ELVAIGTVADLVPLVDENRYLVKRGIQEMRRSLSPWVQAMCDIASTEQAKITEETIGFYF
GPRLNAVGRLGEAAPGVELLMADDSAKASALAKQLNACNTERKDIVKSITDEAIALIESD
EKIGNSLVLVVAGEGWNAGVVGIVASRLVEQYYRPTIVLSLDPEKGTAKGSARSIEGFHL
YNELAKNRDILPHFGGHPMAAGMTLSLEHVDELRTRLDAQARECLTEEQLTPIVHIDIPL
SIDEISADAIEEISALGPFGTDFPKPVYVLEDVEISSMRKIGAAENHIKMELTNGYDKLD
SVGFNKGHLHDELTYGIKVSFIGDLQINEWQGRKKAQFMIEDVQTTEWQLFDIRGIRQTA
RWLNTVPKDEAQFIAFHPATMAYYQSLIGAPITVVDPALSNVEQSDYIVLLDLPQQVQRL
EEVLQKTTPSRIYAHFYMPDSQYFSGLPTREQFSWYYKFLKNRPAFPLDMHIADLAKHTG
WPLDVLKFMTQVFFELGFVKMESGLTTVNVNAPKQALTEAPSYKQRSEQIEMEQKLVYAP
YIELKQWFDERLT

NT seq 2022 nt +upstreamnt +downstreamnt
atgctaaatgttttactagatcttggagcggatgtatcctttaaaatccccaatcgtttt
atccatggttatggtccacatgaggcattatttcgtgaagcatatgaagagggtgtacag
ttaatcataacagtagataacgggatatctggtatcgaacctgttcgagtggctaaagag
cttggcatggatgtcattgtgacagatcaccatgagccaggtgaggaactaccgccagca
gatattattcttcatcctcgattaccagaaggtcattatccgtttggagagctagctgga
gtaggtgtagcctttaagttagcacatgctttatatggtgaactaccaattcatttaatg
gaattggtggcgattggaactgtagctgatttagttcctttagtggatgaaaatcgctat
ctcgtgaagcgaggtatacaggaaatgcgtcgttcccttagtccatgggtacaagcaatg
tgtgatatagccagtacagagcaggcaaaaattacggaagagacaattggcttttatttt
ggtcctcgattaaatgctgttggtcgactcggagaagcagctccaggagtcgagttatta
atggcagatgatagtgctaaagcaagcgcattggcaaagcagcttaatgcctgcaataca
gagcgcaaagatattgtgaaaagcattacagatgaggccattgcacttattgaatcggat
gaaaaaatcggcaattccttagttcttgttgtggcgggggaaggctggaatgcaggcgtt
gttggaatagttgcctcacgacttgttgagcagtactatcgtccaaccattgtcctttca
cttgatcctgaaaagggcacagcaaagggttccgctcgaagcattgaaggcttccatcta
tataatgaactagctaaaaaccgagatattttaccgcattttggtggacatcctatggcc
gcaggcatgaccttatcgttagagcatgtggatgaactacgtacacgcttggatgcacag
gcaagagaatgtttaacagaggagcaattaacaccgatcgtccatattgatattccgtta
agtatcgatgaaatttcagcagatgctattgaagaaatttcagcactaggaccatttgga
acagattttccaaagcctgtttacgtacttgaggatgttgaaatctcatctatgcgtaaa
attggagcagctgagaatcatattaaaatggaattaacaaatggctatgataaattagat
agtgtcggctttaataaagggcatttacatgatgaattaacgtatggcattaaagtatcc
tttataggcgatttacaaattaatgaatggcagggacgtaaaaaagcccaatttatgatc
gaggatgtccaaacaacggaatggcagctatttgatattcgtggtatccgtcaaactgcg
cgttggcttaatacggtaccgaaggatgaggcacagtttattgcctttcatccagcaacg
atggcgtattatcaatcattgattggtgctcctattacagtagttgacccagcactatcc
aatgtggaacaaagtgattatattgtgctcttagatttgccacaacaagttcaaagacta
gaagaggtgttacagaagacgacaccttcacgtatttatgcgcatttttatatgcctgat
tcgcaatactttagtggtttacctactcgtgagcaattttcttggtattataaatttttg
aaaaatcgaccagcctttccgcttgatatgcatatagcagatttagcaaagcatacaggt
tggccattggatgtattaaaatttatgacacaggtgttttttgagcttggttttgttaaa
atggagagtggactgacgactgtcaacgtgaatgccccaaaacaagcactaacagaggca
ccgtcttacaaacaacgttcagaacagattgaaatggagcaaaagcttgtctatgctcct
tatatagaattaaaacaatggtttgatgaacgattaacataa

All links

Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (5)   
   Pfam (5)   
All databases (6)   

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