KEGG T09995: 128241046

Mya arenaria (softshell): 128241046

Entry

128241046         CDS       T09995

Name

(RefSeq) pre-mRNA-splicing factor CWC22 homolog

K13100

pre-mRNA-splicing factor CWC22

Organism

maea Mya arenaria (softshell)

Brite

KEGG Orthology (KO) [BR:maea00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:maea03041]
    128241046
Spliceosome [BR:maea03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    128241046
Complex C
   U4/U6.U5 tri-SnRNP related factors
    128241046

SSDB

Motif

Pfam:

MA3 MIF4G

Other DBs

NCBI-GeneID:

128241046

NCBI-ProteinID:

XP_052813992

Position

7:28076501..28111402

AA seq 1166 aa
MPRRRHDSSSDDSDSSDDDHRRRKPVSAERTGRKRHDSQSDSSASDDVPAKSVVSKVERG
REREDENTGIRYIDQRDKGGDRNGRNRGASTGRRDRQGDDRQRRNSPPPPRDPPPPRDEG
GLVVRDERTYPVRGRNSRQGRQNAPSPRKRGNGNSNRQGYRSDNQDRSSDDRGGNRDRDG
RGQRQLGSRSPERAAKRSDLDRSEGRRRRASMSPKRSESYQDRDLSRSRNSGDDRRGDLV
DRSGSRKKRDADLSRSRSPESTGKRSHTRSEKRGSHSNSPENNVSRKSRSKHSKESDRRS
QLSLEKELRDEDPMANEVRPPSKKKGKKKSKKTEEEDLESSFERSKKFLCEHSSEFDIPE
PETMDILSPTTELPKKSKKDKRPHETSESEDETPKKKSKEGKKKGKKKSKKEVRDSSASP
SPERVSSKKSKKSKQKSYSRSPSPLDRSGRSDPNRSRSSDVSVGRKHDLAQFESEPESGE
LTDSDEEARQGEGWEATLRSTVKKPEGQNPLAGMEDEKYLMAKQKAEKLLREKQDAAKKN
DDRPSKRKATPTKDTTSEAAQSPAPKKAKPADGGAEAFTGRTGGAYIPPARLRAMQAKIT
DKSSVEFQRISWEALKKSINGLVNKVNVGNIENIVRELFQENIVRGRGLMARSIIQAQAA
SVTFTHVYAALVAIVNTKFPQNGELVLKRLIVQFRRGYKRNDKSICLSATRFIAHLVNQQ
VAHEVLALEVLMLLLDTPTDDSVEVAVGFLKECGQKLTEVSPRGINAIFERLRNVLHEGQ
IDLRVQYMVEVMFAVRKDNFKDFPAILDDLDLVEEEDQFTHLLTLEDAQNPEDILNVFKP
DPNFQESEEKYAILKKEILGEAGSDDDDEEGSGSGDSDSEAGSSEQEDEEAKQTIIDQTE
TNLVALKRTIYLTIQSSLDFEECAHKLLKMELRPGQEVELCYMILDCCAQMRTYEKFYGL
LAGRFCMIDKKYVTPFQAMFREQYETIHRLETNKLRNVAKFFAHLLHTDSISWAVLECMK
LNEDDTTSASRIFIKILFQELSEYLGLPKLNDRLKDPTLLEYYAGLMPRDNPRDTRFAIN
FFTTIGLGGLTDDLRDHLKNVSMKLMAQKQEQQAAAAIAVDSSDSSDSESNDSSSSGSDS
SDSDSSSVKKRFEPMEGRSVGRAASF

NT seq 3501 nt +upstreamnt +downstreamnt
atgccgagaagaaggcatgactcatcttcagatgattctgatagtagcgatgatgaccat
cgtagaagaaagcctgtgtcagctgaaagaactggcagaaaaaggcatgactctcagtca
gactccagtgctagtgacgatgtccctgcaaagtctgttgtgtcgaaggtggaacgaggt
agagaaagagaggatgagaacacaggcattagatatatagatcagcgggataaaggtgga
gataggaatggaagaaatcgaggcgcaagtacagggaggcgagacaggcagggagatgat
agacagaggagaaattccccgcctcctccaagagatccgcctcctccaagagatgaaggt
ggtcttgtcgttcgagatgagaggacatatcctgtaagaggtagaaatagcaggcagggt
cggcagaatgctccgtctccaagaaaacgaggcaatgggaattccaacaggcaggggtac
aggagtgataatcaggacagatcgagtgatgatagaggagggaatagggatagggatggg
aggggccagagacagttaggatcaaggtcgcctgaaagggcagccaaaagaagtgacctt
gacagatctgaaggtcgaaggcgaagagcttcaatgtcccctaaacggagtgaatcatat
caggatagggatcttagtaggtctagaaactcgggtgacgacaggcggggtgatttagtt
gacagaagcggaagtaggaaaaagcgagatgctgacctttcaaggtcaagatcaccagag
tccactggtaagaggtcacatactcgaagtgaaaagcgtggctcacactcaaattctcct
gagaataatgtctcaagaaaatctcgatcgaagcattcaaaagagtcagatcgaagaagt
cagttgtcattggaaaaggaacttcgtgatgaagacccgatggctaatgaagtaagacct
ccatcgaagaagaagggtaaaaagaagagtaaaaagactgaggaagaggatttggagagt
agttttgaaagaagtaagaaatttctttgtgaacattccagtgagtttgatattcctgag
ccagagacgatggacattcttagtccaacaacagagttgccaaagaaatcaaagaaagat
aaacgaccgcatgagacatcagaatcagaggatgaaacccccaagaaaaagtcaaaagag
ggtaaaaaaaaggggaagaagaaatcaaagaaggaagttcgggattcctccgcgtctccc
agccctgagcgagtcagttctaagaaatcaaagaagtcaaagcaaaagtcatattccaga
tctcctagtccacttgacagatctggtagatcagatcccaacagatctcgttcctctgat
gtctcagtgggtcgtaaacacgacctggctcagtttgagagcgagccagaaagcggggaa
ctaacagacagtgatgaagaggcaagacaaggagagggatgggaagctactctaaggagc
acagtcaaaaagccagagggccagaatccgctagctggaatggaggacgagaaatatctg
atggccaaacaaaaggcagaaaagttgttgagagaaaagcaggatgctgcaaagaaaaat
gacgaccgtccaagcaagaggaaagccacacccacaaaggacacaacatcagaagcagcc
cagtccccagctcccaagaaggcaaagccagctgatgggggagcagaagcctttacaggg
agaacgggaggagcctacatcccccccgccaggctacgtgcaatgcaggctaaaattacc
gacaagtctagtgtggagttccagcgaatctcgtgggaggctctgaagaaatctatcaac
ggtctggtgaacaaagtcaacgtgggaaatatcgagaatatcgtacgggagctgttccag
gaaaacatcgtcaggggaagaggtctaatggcgcgatctattatccaagcccaggctgca
tctgtgacatttacacatgtgtatgctgctcttgtggccattgtaaacaccaagtttccc
cagaatggagagcttgtgttgaaacgtctgatcgtccagttccgacgaggctacaagagg
aatgacaagagcatctgcctctctgctacacgctttatagctcacctagtcaaccagcaa
gtggcccatgaagttctcgccctggaagttctaatgttgctactggatacgcccacagac
gattcggtcgaggtcgccgtcggatttctcaaggaatgcggacagaagcttaccgaagtc
tcaccaaggggaatcaatgcaatcttcgaacgactgagaaacgttttacacgagggccaa
atagatctccgcgtacagtacatggtggaagtcatgtttgctgttcggaaggacaacttt
aaggactttccagccatcttagatgaccttgacctcgtggaagaagaggaccagtttacc
catctcctaaccctggaggacgcccagaacccggaggatatactcaatgtgttcaagcct
gatcccaactttcaggagagtgaagaaaagtatgccatcctcaagaaagagatccttgga
gaggcaggttcagacgatgacgatgaagagggttctggaagtggggattctgacagtgaa
gcagggagcagtgaacaggaagatgaggaggccaagcagaccatcattgaccagacggag
accaacctggttgctttgaagaggaccatctacctgaccatacagtcgagtctggacttt
gaagagtgtgctcataaactcctgaagatggaactcaggccgggacaagaggtggagctt
tgttacatgatcctggattgctgtgcccagatgaggacctatgagaagttctacggcctg
ctggcggggcgcttctgcatgatagacaagaagtatgtaacgccattccaagccatgttc
cgggaacagtatgaaaccattcatcgtcttgagacgaataagttgagaaatgtggccaag
ttttttgctcatttgcttcataccgactccatctcttgggctgtgttggagtgtatgaag
ctgaatgaagatgacacaacatcggctagtcgaatcttcatcaagattctgtttcaagag
ctctcagaatacttgggactgccaaaactcaacgacagacttaaagatccgaccctgttg
gagtactacgctggtctcatgccgagagacaacccccgggacacgagatttgccatcaat
ttcttcactacaattggactgggtggactgactgatgacttgcgtgaccacctaaagaac
gtctctatgaagctaatggcacagaagcaggaacagcaggcagcggcagctatagcagtt
gactcctcagacagttctgactcggaatcaaatgattctagctccagtggatctgatagc
agcgactctgacagctcttcggtaaaaaagcgttttgagccaatggagggtcgttccgta
ggacgagcagcctcgttctga

All links

Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (6)   

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