KEGG   Marinobacter nauticus VT8: Maqu_1438
Entry
Maqu_1438         CDS       T00454                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
maq  Marinobacter nauticus VT8
Pathway
maq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:maq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Maqu_1438
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:maq03019]
    Maqu_1438
   03400 DNA repair and recombination proteins [BR:maq03400]
    Maqu_1438
Enzymes [BR:maq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Maqu_1438
Messenger RNA biogenesis [BR:maq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Maqu_1438
DNA repair and recombination proteins [BR:maq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Maqu_1438
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII HHH
Other DBs
NCBI-ProteinID: ABM18524
UniProt: A1U0K5
Position
1622440..1624317
AA seq 625 aa
MYMDQDFDQLATEPPTAAGRNPEQVLHEVFGYESFRPLQGDIVREVVNGGDALVLMPTGG
GKSLCYQVPALVRPGTAIVISPLIALMQDQVAALRELGVKAAFLNSTMDFEQARATEYAL
ATGELDLLYCAPERLIQPRTIELLHNASLSLFAIDEAHCVSQWGHDFRSDYLQLSMLAQE
FPGIPRIALTATADERTRKEIAERLSLTNARHFISGFDRPNIQYRITPKTNANKQLLDFI
KAEHEGDCGIVYCLSRNKVDATAQLLSSKGYTALPYHAGLSAEDRARNQERFLREDGVIV
VATIAFGMGIDKPDVRFVAHLDLPKSLEAYYQETGRAGRDGKPSTAWMVYGLQDVIKLRQ
MLEASQGNDQFKRVERQKLDAMLGLCEVTQCRRQVLLHYFGDNLETPCGNCDTCLNPPET
WDGTVAVQKALSCVYRTGQRFGVNYVIDVLRGSENERILQSGHQAITTYGIGQELSANEW
KSVFRQLVANGYLRADPEGYGALQLTERCRPLLKGEQAIELRKDPVARKAAGGKSSSSRR
SGQNVRDQITDHAGWDALRACRKELADKQGVPPYVIFHDTTLFDMLERRPSTLEELAEVS
GVGAAKLEKYGDVFLQALRSINPEA
NT seq 1878 nt   +upstreamnt  +downstreamnt
atgtacatggaccaggacttcgaccaactcgccactgaaccacccaccgctgcgggccga
aatccggagcaggttctgcacgaggtctttggttacgagagttttcggcccctgcagggg
gatattgtccgggaagtggtcaacggcggtgatgcccttgtattgatgcccaccgggggc
ggtaaatccctgtgttaccaggtgcccgctctggtccggcccggcaccgccattgtgatc
tcaccgctgatcgcgcttatgcaggatcaggtggcggcgctgagggaactcggggtgaag
gcagcgtttctgaattccaccatggatttcgaacaggcccgtgccacggaatatgcccta
gcaaccggtgagttggatctgctctattgcgcgcccgaacggctgattcagccgcgaacc
attgagctgctgcataacgcgtccctgtcgttgtttgccatcgacgaggctcactgcgtc
tcccagtgggggcacgatttccggtccgactaccttcaactgagcatgctggcgcaggaa
tttcccggcatcccccgtatcgcactgacagcgaccgctgatgagcgcacgcgaaaagag
attgcggaacggctgtcgctgactaacgcgcggcatttcatcagtggctttgatcgcccc
aatattcagtaccgaattacgccaaagaccaacgcaaacaagcaattattggattttatt
aaagcagagcatgaaggtgattgcggtattgtctattgcctgtcccgaaacaaggtcgat
gccaccgcccagttactgagcagcaagggctataccgcactgccctaccatgccggcctg
agcgccgaagaccgggcccgcaaccaggaacggtttctgcgggaagacggcgttattgtg
gtggcaaccattgcctttggtatgggcatcgacaagccggatgttcgctttgtcgcccat
ctggatctccccaaaagcctcgaagcctactaccaggaaaccgggcgggcgggccgggat
ggcaaaccttccactgcctggatggtgtatgggctgcaggatgtgatcaaactccggcag
atgctggaggcctctcagggcaatgatcagttcaagcgcgttgagcgacaaaagctggat
gccatgctcgggctgtgcgaagtcacccagtgccggcgccaggtgttgttgcactatttc
ggagacaacctggagacgccctgcggaaactgcgatacctgcctgaacccaccggaaacc
tgggatggcacggtggcggtgcagaaggccctgtcctgtgtctaccgcaccggccagcgt
tttggcgttaactatgtcattgatgtgcttcgcggctcagagaatgagcgaatcctgcaa
tccggccatcaggcgatcaccacctatggcatcggccaggaactgtcagcgaacgaatgg
aaatcggtattccggcaactggtggcgaacggctacctgcgggcagacccggaaggctat
ggcgcgcttcagctaaccgagcgctgccggccgctgctcaagggtgagcaggcgattgag
cttcggaaagacccggttgcccgcaaagccgctggtggtaaatcatcaagcagccgccgt
agcggccagaatgtgcgggatcagattaccgaccacgccggatgggacgcgttgcgggcc
tgccgcaaagagctggcggacaaacagggcgtgccgccctacgtaatcttccacgacacc
accctgttcgacatgcttgaacgccgcccttccaccctggaggagctcgccgaggtcagc
ggcgtgggcgccgccaagctggaaaaatatggcgacgtcttccttcaggcgctacgctct
atcaatcctgaggcttga

  All links  
Gene (47)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (55)   

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