KEGG T05761: 110620960

Manihot esculenta (cassava): 110620960

Entry

110620960         CDS       T05761

Name

(RefSeq) pre-mRNA-splicing factor CWC22 homolog

K13100

pre-mRNA-splicing factor CWC22

Organism

mesc Manihot esculenta (cassava)

Brite

KEGG Orthology (KO) [BR:mesc00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mesc03041]
    110620960
Spliceosome [BR:mesc03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    110620960
Complex C
   U4/U6.U5 tri-SnRNP related factors
    110620960

SSDB

Motif

Pfam:

MA3 MIF4G

Other DBs

NCBI-GeneID:

110620960

NCBI-ProteinID:

XP_021620611

Position

8:32161381..32169298

AA seq 815 aa
MARKYSDSSDDERSRYRRHERRSERWRVVDNDKDGGRIGEQEDRDREERRGRDVRERKSS
RVSSDEEGELVERERGEPDRERNSDRRDRVKEYNHSSDEDNDQRERRDRHERERNRRHEN
GHRRREAEDRSRDRHWKSERERDRIDDDRRRRHKNRDESDDDGENGRRKEKNESGEDGDR
GKVVEDSKPRKTTSGEGNLNTEASNLGRSGGVYIPPFKLARMMKEVQDKSSVEYQRLTWD
ALRKSINGLVNKVNATNIKNIIPELFSENLIRGRGLFCRSCMKSQMASPGFTDVFAALVS
VVNTKFPEVGDLLLRRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLAV
LLENPTNDSVEVAVGFVTECGSILQDMSPKGLDGAFERFRGILHEGEIDKRVQFLIEGLF
AIRKAKFQGYPAVRPELDLVEQEDQLTHEISLQEDIDPEITLDIFKPDPNFLENEKRYEE
LRKNILGEESADEEGSDAASGDEDDDDDEEEEEEDDDDDDEQQMQIKDETETNLVNLRRT
IYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMIN
KVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVIAYIRLTEEDTTSS
SRIFIKILFQELSEHLGIRTLNERLTDPAMQDTFESIFPRDNPKNTRFSINFFTSIGLGG
ITENLREYLKNMPRLIMQQQKPVSESESDDESGSSGSSDSGSGSSEPESELESDSSSSDE
DERLQKRSRSDRDERSRKRSRKDRDERNRKRSRRD

NT seq 2448 nt +upstreamnt +downstreamnt
atggcgagaaaatacagtgattccagtgacgacgaaaggagtaggtatcgtcgtcacgag
agaagaagcgagcgttggcgcgtcgtcgataatgataaagatgggggcagaattggtgag
caggaagatagggatcgagaggaaaggaggggaagagatgttcgagaaagaaagtcatcg
agggtaagttccgacgaagaaggagaattggtggagagagaaaggggcgagccagataga
gagagaaatagtgaccgtagggatagggttaaagagtataatcatagttctgatgaagat
aatgaccagcgggagaggagagacaggcatgaaagagaaagaaaccgtcggcatgaaaat
gggcatagacggcgagaagctgaggatagaagtagggaccggcactggaaatcagaacga
gagagggatagaattgatgatgacaggcgcaggaggcataagaacagagatgaatcagat
gatgatggcgaaaatgggagacgcaaggagaaaaatgaatcgggggaagatggcgaccgt
ggaaaggtggttgaagactcaaaacctcgaaaaacaacatccggagaaggaaatctgaac
actgaagcatcaaatttgggcagaagtggaggggtttacatccctccttttaaattggcc
cgaatgatgaaggaagttcaagataaaagcagtgtcgagtaccagagattgacatgggat
gcccttcgtaagagtattaatgggcttgtgaacaaggttaatgccaccaacataaagaac
attatcccagaactgttttccgagaatctgattcgagggaggggtctcttctgtcgatca
tgtatgaagtctcagatggcatctccgggctttactgatgtttttgctgcactggtttct
gttgtgaacactaaatttcctgaggtcggagatcttttattgagaaggatagttttgcag
ctcaagagagcatataagcggaatgacaagcctcaattgctagctgctgttaaatttata
gcacatcttgtgaaccagcaagtggctcatgagattattgctctagaactccttgctgtt
ttgctggagaatcccaccaatgacagtgttgaggttgcggttggttttgtcacagagtgt
gggtccatacttcaagacatgtcaccaaaaggcctggatggagcttttgagcgatttcgt
ggaattcttcatgaaggagagattgacaagcgggtgcagtttttgattgaaggccttttt
gccattagaaaagccaaatttcaggggtaccctgctgtacgtccagagctggaccttgta
gagcaggaagaccagttaacacatgagatatcactccaggaggacatagatcccgagatc
actcttgatattttcaagccagatcctaatttccttgaaaatgagaagcgctatgaagaa
ttaaggaaaaacatccttggtgaggagtctgcggatgaagaaggttctgatgcagcttca
ggtgatgaggatgatgatgatgatgaggaggaggaggaggaggacgacgacgacgacgac
gaacaacagatgcaaataaaagatgaaactgaaactaatcttgtaaatcttcggaggaca
atttatctgaccatcatgtccagtgtagattttgaggaggctggccacaagttactgaaa
atcaaactcgagccaggccaggagatggaattatgcatcatgcttttggaatgttgcagt
caggagagaacttacctccggtactatggtcttttagggcagcgattttgcatgatcaac
aaagtccaccaagaaaattttgagaagtgctttgttcaacaatattccatgattcatcgg
ctagaaacaaataagttgcgtaatgtggcaaagttttttgcccatttacttggtactgat
gccctgccttggcatgtgatagcttatatacgcttaactgaagaggacaccacttcttct
tctcgtatatttatcaagattctcttccaggagttgtcagagcatcttggaatccgtaca
ttgaatgaacgtcttacagatcctgcaatgcaagatacatttgaatctattttccctaga
gataatccgaagaatacacgcttttccatcaatttcttcacatccattgggcttggtggc
atcacagaaaatttgcgcgaatacttgaagaatatgccacggcttatcatgcaacagcaa
aaacctgtctcagaatctgaatcggatgatgaatctggaagctctggttcatcagactca
ggatctggtagttcagaaccagagtcagagttggagtcagattcatcaagctctgatgag
gacgaaagactccagaagcggagtagaagtgatagggatgaaagaagcaggaagcgaagt
agaaaggatagggatgaaagaaacaggaagcgtagtagaagagattag

All links

Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (6)   

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