KEGG   Alexandromys fortis (reed vole): 126503317
Entry
126503317         CDS       T08493                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1 isoform X1
  KO
K14401  cleavage and polyadenylation specificity factor subunit 1
Organism
mfot  Alexandromys fortis (reed vole)
Pathway
mfot03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mfot00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    126503317
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mfot03021]
    126503317
   03019 Messenger RNA biogenesis [BR:mfot03019]
    126503317
Transcription machinery [BR:mfot03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     126503317
Messenger RNA biogenesis [BR:mfot03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     126503317
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd UspB
Other DBs
NCBI-GeneID: 126503317
NCBI-ProteinID: XP_050000856
Position
Unknown
AA seq 1441 aa
MYAVYKQAHPPTGLEFAMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKSDGGTEGK
AHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLMGEG
QRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI
VAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVAL
NSLTTGTTSFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITDGMRSVRAF
HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPLASSVREAADKEEPPSK
KKRVDPTAGWTGGKTVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSMLNIGPCANAAVG
EPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAP
VRKEEEETPKAESTEQEPAAPKAEEDGRRHGFLILSREDSTMILQTGQEIMELDTSGFAT
QGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVVIMSAE
GHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVIALCLYRDVSGMFTTESRLGGARDELG
GRSSSEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSNQPPADRDPAPFRVDPT
HWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEVRKEEATRQGE
LPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNINFR
EKKPKPSKKKTEGCSTEEGPGVRGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGALR
LHPMGIDGPIDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTA
HYVAYHVESKVYAVATSTNTPCTRIPRMTGEEKEFEAIERDDRYIHPQQEAFSIQLISPV
SWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRILIM
DVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASELTG
MAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMV
DNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAAEG
PSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFR
MLHMDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRVTAH
F
NT seq 4326 nt   +upstreamnt  +downstreamnt
atgtacgcggtgtataagcaggcacacccgcccaccgggctggagtttgccatgtactgc
aacttcttcaataacagtgagcgcaacctcgtggtggccggcacctcgcagctctatgtg
taccgcctgaaccgcgacgctgaggctctgaccaagagtgatgggggcacggaggggaag
gcccatagagagaaactagagctggtagcctccttctccttttttggcaacgtcatgtcc
atggccagcgtgcaacttgcaggtgccaaacgtgatgccttgcttctcagtttcaaagat
gctaagctgtcagtggtggagtatgacccaggcacccatgacctgaagaccctgtctctc
cactactttgaggagcctgaacttcgggatggctttgtgcagaatgtgcatacgcctcgt
gtacgggtggaccctgatgggcgctgcgcggccatgctcatctatggcacgaggctggta
gttctgcctttccgcagagaaagcctggctgaagagcatgaggggctcatgggcgaagga
cagaggtccagcttcctgcccagctacatcatcgatgtacgggctctggatgagaagctg
ctcaatatcattgacctgcagttcctccatggctactacgagcccaccctgcttatcctg
ttcgaacccaaccagacctggcccgggcgggtggccgtgaggcaggacacgtgctccatt
gtggctatctcgctgaacatcacacagaaagtccatccggtcatctggtccctcaccagc
ttgccttttgactgtacccaggccttggctgtgcccaagcccataggtggggtggtgatc
ttcgctgttaactctctgttgtacctgaaccagagtgttcccccgtacggtgtggctctc
aatagtctcaccacaggcaccacttctttcccattacgtacccaagagggcgtacggatc
accctggactgcgcgcaggcagccttcatctcttacgataagatggtcatctccctcaag
ggaggcgagatttacgtgctgaccctcatcactgatggcatgcgtagtgtccgagcgttt
cactttgacaaggcagctgctagtgtccttaccaccagtatggtcaccatggagccggga
tacctgttcctgggctctcgcctgggcaactccctcctcctcaagtacacagagaagctg
caggagcccctggccagctctgtccgtgaggctgctgacaaggaagagcctccctctaag
aagaagcgagtggaccctacagcaggctggacaggaggcaagacggtgccacaggatgag
gtggatgaaattgaagtgtatggcagtgaggcccagtctggcacacagctggccacctac
tcttttgaggtgtgcgacagcatgctcaacattggcccctgtgccaatgctgctgtgggc
gagcctgccttcctctctgaagagtttcagaacagtcctgagccagacctggagattgtg
gtttgctccggctacgggaaaaatggggccctgtcagtgctgcagaagagtatccggccc
caggtggtgacaacctttgaacttcctggctgctatgatatgtggacggtcatcgctcca
gtgcggaaagaggaggaagaaacacccaaagcagagagcacggagcaggagcctgctgcc
cccaaagcagaggaggatgggcgacgacatggcttccttattcttagccgggaagactca
accatgatcctacagactggccaggagatcatggagctggacaccagtggctttgccaca
cagggccccacggtctttgccggaaacattggggacaatcgctatattgtccaagtctca
ccgctgggcattcgcctgttggaaggcgtgaatcagctgcacttcatccctgtggacctg
ggtgcccccattgtccagtgtgctgtggctgatccgtatgtggtcatcatgagtgctgag
ggtcacgttaccatgttcctactcaagagtgattcatatggtggccgccaccaccgcctg
gcactacacaagcctccactgcatcatcagtctaaggtgattgcgctctgcctgtaccgt
gatgtcagtggcatgtttaccactgagagccgcctgggtggggcccgtgatgaactgggg
ggccgaagtagctcagaggctgaaggtctgggctcagaaacaagccccacagtggacgat
gaggaagagatgttatatggggactccggctccctcttcagtcccagcaaagaggaggcc
cgcaggagcaaccagcccccggctgaccgtgaccctgcacccttcagggtagaccccacc
cactggtgtctgctggtgcgggagaatggcaccatggagatctaccagctcccagactgg
cggctggtgttcctagttaagaacttccctgtgggacagcgggtcctggtggacagttct
tttggacagcccactacacaaggtgaagtccgaaaggaggaagccacacgccagggggag
ctgcctttggtcaaggaggtgttgctggttgccctgggaagccggcagagcaggccctac
ctactggtacacgtggaccaggagttgcttatctatgaagccttcccccatgactctcag
cttggccagggaaatctcaaagttcgcttcaagaaggtcccccacaacatcaacttccgt
gagaagaagccgaagccatctaaaaagaagacagaagggtgcagcaccgaggagggacct
ggagtccgaggccgtgtggcacgtttccgctacttcgaggatatttatggctattcaggg
gttttcatctgtggaccctcgcctcactggctcctggtgactggccgtggggctctgcgt
ctgcatcccatgggcatcgatggccccattgactcctttgctccattccacaatgtgaac
tgccctcgtggcttcctgtacttcaacagacagggtgagctgaggatcagcgtcctgcct
gcctacctgtcctatgatgctccgtggcctgtcaggaagatcccactgcgctgcacagcc
cactacgtggcctaccatgtagagtccaaggtgtatgctgtggccaccagcaccaacaca
ccctgcactcgcatcccacgcatgactggtgaggaaaaggaatttgaggccattgagaga
gatgacagatacatccacccccagcaagaagccttctccatccagctcatctccccagtc
agctgggaggccattcccaatgccaggattgagctagaggaatgggagcatgtcacgtgc
atgaagactgtgtcactacgcagtgaggagaccgtctcaggcctaaagggctatgtggct
gctgggacctgcctcatgcagggggaggaagtcacctgccgtgggcggatcctgatcatg
gacgtgattgaagtggtgcctgagcctgggcagcccctgaccaagaacaagttcaaggtc
ctgtatgagaaggagcagaaggggcctgtgaccgcgctatgccactgcaatggccacctg
gtgtcagccattggccaaaaaatcttcctgtggagcctgcgggccagcgagctgacgggc
atggccttcattgacacccagctctacatccaccagatgatcagtgtcaagaacttcatc
ctggccgcagacgtcatgaagagcatctcactgctgcgttaccaggaggagagcaagacg
ctgagcctggtgtcccgggatgccaagcctttggaggtgtacagcgtggatttcatggtg
gacaatgcccagctgggcttcttagtgtctgaccgagaccgcaatcttatggtgtacatg
tatctgccagaagccaaagagagttttgggggcatgcgcctgctgcgccgggcagacttc
catgtgggtgcccatgtgaacacattctggaggaccccatgcagaggtgctgcagaggga
cccagcaagaagtcggtcgtgtgggaaaacaagcatatcacatggtttgccaccctggac
ggtggcattgggctcctgttgcccatgcaagagaagacataccggcggctgctgatgctg
cagaatgcactgacaactatgctaccccaccatgccggcctcaacccccgtgccttccga
atgttgcacatggaccggcgcaccctacagaatgctgtgcgcaacgtccttgatggagag
ctactaaaccgctacctataccttagcaccatggagcgcagtgagctggccaagaagatt
ggtaccacacccgacattatcctggatgacttgctggaaacagaccgtgtcaccgctcac
ttctaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (10)   

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