KEGG   Miniphocaeibacter halophilus: JFY71_09030
Entry
JFY71_09030       CDS       T08075                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mhap  Miniphocaeibacter halophilus
Pathway
mhap03030  DNA replication
mhap03410  Base excision repair
mhap03420  Nucleotide excision repair
mhap03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mhap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JFY71_09030 (ligA)
   03410 Base excision repair
    JFY71_09030 (ligA)
   03420 Nucleotide excision repair
    JFY71_09030 (ligA)
   03430 Mismatch repair
    JFY71_09030 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mhap03032]
    JFY71_09030 (ligA)
   03400 DNA repair and recombination proteins [BR:mhap03400]
    JFY71_09030 (ligA)
Enzymes [BR:mhap01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     JFY71_09030 (ligA)
DNA replication proteins [BR:mhap03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     JFY71_09030 (ligA)
DNA repair and recombination proteins [BR:mhap03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     JFY71_09030 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     JFY71_09030 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     JFY71_09030 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      JFY71_09030 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 Nlig-Ia HHH_5 BRCT HHH PTCB-BRCT DNA_ligase_ZBD HHH_3
Other DBs
NCBI-ProteinID: QQK07449
UniProt: A0AC61MPK4
Position
1831061..1833055
AA seq 664 aa
MDKISRIEELIKRVTELNYHYYTLDEPIVSDSEYDELYDELVALEKETGYVKDTSPTQRV
GEVLLEGFVKHNHINPLYSLDKAQTFGELNDWVVRCEKMVSNYNAINEDKLPELKYIIEL
KFDGLTINLTYNNGKLQMAATRGNGTVGEEILPQVKTIRSVPLEIDFKGLMEVQGEGLMP
LSELDNYNKNNEIQLKNARNAAAGALRNLNPKETEKRHLTAFFYNIGYIEGKEFSSQLEM
VDFIKENKFKVNKFFRIAKNLEEIEETINYIDEYRKTIDILTDGAVIKINDLKTREVLGY
TNKFPRWAIAYKFAPEEVSTILKDVVWNVGRTGKVTPSAILEPVEIGDVTVQRATLNNYD
DILRKKVELNSRVLIRRSNDVIPEILGVIDDGRETTPIELPTKCPYCHTDLIKDGVHIFC
PNSMSCEPQLVSRLVHFASRDAMNIDGLSEKTIEKMLDILNVRQISQIYDLTADNLLKIP
GFKEKKTNNLLTAIEKSKDVKLENFIYAIGIPNVGIKTSEDLAKKFKEFSNLSKATVEEL
TEVDDIGEITAEAIVEFFHDEEIVNGIRSLLSKGIKIENPKEKSIVSSEKFNEKRIVITG
SFEKYKRKDLEKIFKEKGAKTGSSVSKNTDFVIVGTDPGSKLTKAQELGVQIIYEDDLEE
FIKD
NT seq 1995 nt   +upstreamnt  +downstreamnt
atggataaaatatctagaatagaagaattaataaaaagagttacagaacttaattatcat
tattacactttagatgaacctattgtttcagatagtgaatatgatgaattatatgacgaa
ttagtagcattagaaaaagaaacagggtatgtaaaagacacttctcctactcaaagagta
ggggaggtgcttttagaaggatttgtaaagcataatcatataaatcccctatatagtcta
gataaagctcaaacttttggtgaattgaacgattgggtagttagatgtgagaaaatggta
agtaattataacgccataaatgaggataaactaccggaattaaaatatattatagagtta
aagtttgatggtctaacaattaatttaacttataataacggaaaacttcaaatggcagct
actaggggcaatggaactgtaggagaggagattttacctcaagttaaaactattagatca
gttcctttagaaatagactttaaagggcttatggaagtacagggagaagggttaatgccc
ttgtccgaacttgataattataataaaaacaatgaaatacaattaaaaaatgcacgaaat
gcagcagcaggtgctttaagaaatttaaatccaaaagaaactgaaaaaagacacttaaca
gcatttttttacaatattggatacattgaaggaaaagaattttcaagtcaattagaaatg
gttgactttataaaagaaaataaatttaaagttaataaattttttagaatagcaaaaaat
ttagaagaaatagaagaaacaattaactatatagatgaatacagaaaaaccattgacata
ttaacagacggtgccgttataaaaataaacgatttaaaaaccagagaagtattaggatat
actaataaatttccaagatgggcaatagcatataaatttgcacctgaagaagttagtaca
atcttaaaagatgtagtttggaatgtaggaagaactggaaaagttactccatcagcaata
ctggaaccagtagaaattggtgatgtaacagttcaaagagcgaccttaaataattatgat
gatatattgagaaaaaaagtagaattaaattcaagggtgcttattagacgttcaaatgat
gttataccggaaatattaggagttatagatgacggcagggaaactactcctattgaatta
cctacaaaatgcccttattgtcatacggatttaataaaagacggagttcatatattctgt
ccaaactctatgagttgcgaacctcaattagttagtagacttgttcattttgcttcaaga
gatgcgatgaacatcgatggtttaagtgaaaaaaccatagagaagatgttggatatttta
aatgttagacaaatttctcaaatatatgatttaacagcagataatcttttaaaaattcca
ggtttcaaagaaaagaaaacaaataatttacttacagctattgaaaaaagcaaagatgta
aaattggaaaatttcatatatgctattggaatacctaatgtaggaataaagactagcgaa
gatttagctaaaaaatttaaagaattttcaaatctatcaaaagcaactgtagaagaatta
acagaggttgatgatataggtgaaattactgcagaggcaattgtagaattttttcatgat
gaagaaatagtaaatggaataagaagtttattatcaaagggaataaaaattgaaaatcca
aaagaaaaatctattgtatcaagtgaaaaattcaatgaaaaaagaatagtaattaccggt
tcctttgaaaaatataaaagaaaggatctagagaaaatatttaaagaaaaaggtgcgaaa
acaggctcttcagtttctaaaaatacagattttgttatagttgggacggacccgggaagt
aagcttacaaaagcacaagaactaggtgtacaaataatatatgaagatgatttggaagaa
tttataaaagactaa

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (12)   

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