KEGG   Microbacterium sp. che218: CHE218_14700
Entry
CHE218_14700      CDS       T10698                                 
Name
(GenBank) DNA polymerase domain-containing protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
micm  Microbacterium sp. che218
Pathway
micm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:micm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CHE218_14700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:micm03400]
    CHE218_14700
Enzymes [BR:micm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CHE218_14700
DNA repair and recombination proteins [BR:micm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CHE218_14700
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S
Other DBs
NCBI-ProteinID: BFM24428
Position
1563663..1564892
AA seq 409 aa
MSPAKTPPEILDVDGHEVRVTSPDRIVFPEPGLTKLDLVRYYLSVAEGALRGAGGRPMVL
KRFSKGLDQEPFFQKRVPENHPDFIDTATLRYASGTSAEETVIRDAAGLAWVVNLGCLDL
NPHPVRAEDLDHPDELRVDLDPMPGVDWSQIVDVAFIARDVLEDHGLTGWPKTSGSRGLH
ILVRIRPEWDYADVRLAAETLAREVENRAPGLATARWWKEERGESVFVDFNQNAKDRTVA
SAYSIRALPDARVSTPLTWDEVRDRRPEEFTVLTVPDRFRSVGDPHAGIDDAAGSLDALL
ALAKELGPAEKPPRGSDGSGRRASTMPLIEVARTKTKPEALDALETWKQRHREATSKLHP
ADVLVDGMRGSSSLWYRVRVNLQHVPDAERPAQEDLIADYDPWAGRSAS
NT seq 1230 nt   +upstreamnt  +downstreamnt
atgagccccgcgaagacgccgcccgagatcctcgacgtcgacggccacgaggtccgcgtc
acgagccccgaccgcatcgtgttccccgagccgggcctcaccaagctcgacctcgtgcgg
tactacctctccgtcgccgaaggcgccctccgcggagccggcgggcgcccgatggtgctc
aagcgcttctcgaagggtctcgatcaggagccgttcttccagaagcgcgttcccgagaac
caccccgacttcatcgacaccgcgaccctgcgctacgcctcgggcacctccgccgaagag
acggtgatccgggatgccgcggggctggcctgggtcgtcaacctcggctgtctcgacctg
aacccgcatcccgtccgcgccgaagacctcgatcaccccgacgagctgcgcgtcgacctc
gacccgatgcccggcgtcgactggtcgcagatcgtcgacgtcgccttcatcgcccgcgac
gtgctcgaggaccacggtctgaccggctggccgaagacctcgggctcgcgcgggctccac
atcctcgtgcgcatccgccccgagtgggactacgccgacgtgcgtctggccgccgagacc
ctcgcccgcgaggtcgagaaccgcgccccgggcctcgcgaccgcccgctggtggaaggag
gagcgcggcgagagcgtcttcgtcgacttcaaccagaacgccaaggaccgcaccgtcgcc
tcggcgtattcgatccgcgcgctccccgacgctcgggtctcgactcccctgacatgggat
gaggtgcgcgaccgccgccccgaggagttcaccgtgctcactgtgcccgaccgattccgc
agcgtcggtgatccgcacgcgggcatcgacgacgccgcgggctcgctcgacgctctcctc
gccctggcgaaggagctcggcccggccgagaagcccccgcgggggtcggacggttcgggc
cgtcgcgcctcgaccatgccgctcatcgaggtcgcgcgcaccaagaccaagcccgaggcg
ctcgatgccctcgagacgtggaagcagcggcatcgggaagcgacgtcgaagctccatccc
gccgacgtcctcgtcgacggcatgcgcgggtcgagctcgctctggtaccgcgtccgcgtg
aacctccagcatgttccggatgccgagcgcccggcgcaagaggatctgatcgccgactac
gacccttgggccggccgttccgcttcctga

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (2)   
   Pfam (2)   
All databases (3)   

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