KEGG   Microbacterium sp. 1.5R: BMW26_08005
Entry
BMW26_08005       CDS       T04912                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
micr  Microbacterium sp. 1.5R
Pathway
micr03030  DNA replication
micr03410  Base excision repair
micr03420  Nucleotide excision repair
micr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:micr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BMW26_08005
   03410 Base excision repair
    BMW26_08005
   03420 Nucleotide excision repair
    BMW26_08005
   03430 Mismatch repair
    BMW26_08005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:micr03032]
    BMW26_08005
   03400 DNA repair and recombination proteins [BR:micr03400]
    BMW26_08005
Enzymes [BR:micr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BMW26_08005
DNA replication proteins [BR:micr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BMW26_08005
DNA repair and recombination proteins [BR:micr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BMW26_08005
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BMW26_08005
   MMR (mismatch excision repair)
    DNA ligase
     BMW26_08005
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BMW26_08005
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT HHH_5 HHH Nlig-Ia PTCB-BRCT Zn_ribbon_TFIIB
Other DBs
NCBI-ProteinID: APH44908
UniProt: A0AAC9K5L1
Position
1702764..1705079
AA seq 771 aa
MPENISLEDARIEADELTTRILEAKDAYYGRDTSLVDDFTYDGWMHRLEELERMHPELQG
QDSPTQMVGAAEATGLATIEHAERMLSLDNVFSIDELRDWAAKTRASAGRAVDWLTELKI
DGLAINLRYENGRLTSAATRGDGRVGEIVTENALRLPEIPLELSGKGHPPIVEVRGEVFI
PVAAFERLNAAQAEFRDRAYADALARWEARSGAKKPFDEEKARTAAARRFPSFANPRNAA
SGGLRQQIDKKEGLELEAGMLRIESLALYVHGIGAWENPPVAAQSQVYDKLSDWGLPTSP
HTRVCTSIDDVVAFVEYFGEHRHDIEHELDGIVVKVDELSLHDELGATSRAPRWAIAYKY
PPEEVQTKLLDIVVSVGRTGRATPFAVMAPAQVAGSVVRQATLHNKDVVKAKGVLIGDTV
VLRKAGDVIPEVLGPVVEKRDGTEREFVMPIECPECGTPLRPMKEGDIDLRCPNARSCPA
QVRGRVEHIGSRGALDIEALGEVTAAALTQPTSPATPPLETEAGLFALTLDEIVPIELVV
RDAETGLPKEDEDGLVKTRAPFRRNPTATEKKSGLEGPQPSSQAVTLLAELEKAKTKDLW
RLLVSLNIRHVGPVAARALAQWFGSLDAIRAASRDELAAVEGVGGIIADSLLAWFDVDWH
QDIVRRWADAGVQWATPGHPGPGAAVVQGGVLDGITVVATGSLDGYTRDGAQEAILKAGG
KAASSVSKKTDFVAAGPGAGSKLGKAEELGIRILDAAQFHILVTEGPDALG
NT seq 2316 nt   +upstreamnt  +downstreamnt
gtgccggagaacatctcgctggaagacgcccgtatcgaagcggacgagctgaccactcga
atcctcgaagcgaaggacgcgtactacgggcgcgacacttcactcgtcgacgacttcacc
tacgacgggtggatgcacaggctcgaagagctggagcggatgcatcccgagctgcagggt
caggactcgcccactcagatggtgggggcggccgaggccaccgggctcgccaccatcgag
cacgcggagcggatgctgagtctcgacaacgtgttctcgatcgacgagctcagggattgg
gccgccaagacgcgcgcctctgcggggcgagctgtcgactggctcaccgaactcaagatc
gacggcctcgcgatcaatctccgctacgagaacgggcggctgacgtcggcggcgacgcgg
ggagatgggcgcgtcggtgagatcgtcaccgagaacgcgctgcgccttcccgagatcccc
ctcgagctcagcggcaaaggtcaccctcccatcgtcgaggtgcgcggcgaggtgttcatt
cccgtggccgccttcgagcgcctgaatgccgcacaggcggagttccgcgaccgggcctac
gccgatgctctcgcccgctgggaggctcggagcggagcaaagaagccgttcgacgaagag
aaggcgcgaactgctgcggctcggcggttcccctcgttcgcgaatccgcgcaacgcggcg
agtggtggcctgcgtcagcagatcgacaagaaggaggggctcgaactcgaggcggggatg
ctgcgcatcgagtcgctcgcgctgtacgtgcacggcatcggggcctgggagaatccgccg
gtcgccgcacagagtcaggtctacgacaagctgtcggactgggggctgccgaccagcccg
cacaccagggtgtgcacgagcatcgacgacgtggttgcgttcgtcgagtacttcggcgag
caccggcacgatatcgagcacgagctggacgggatcgtcgtcaaggtcgacgagctgtcc
ctccacgacgagctcggcgccaccagtcgggcgcctcgctgggcgatcgcgtacaagtac
ccgcccgaagaggtgcagacgaagctgctcgacatcgtcgtgtctgtgggtcgaaccggc
agggcgacgccgttcgcggtgatggctcccgcccaggtcgcggggagcgtcgtcaggcag
gcgacgctgcacaacaaggacgttgtgaaagccaagggagtactgatcggcgacaccgtc
gtcctgcgcaaggcgggcgacgtgatccccgaggtcctcgggccggtcgtcgagaaacgc
gacggtaccgagcgggagttcgtgatgccgatcgaatgccccgagtgcggcacgccgctg
cgtccgatgaaggagggcgacatcgatctgcgctgccccaacgcgcgctcgtgtccggcc
caggttcgcggtcgtgtcgagcacatcggttcgcggggcgccctcgacatcgaggcgctc
ggagaagtcacggcggccgcgctcacccagccgacctcgccggcgacaccgcctctcgag
accgaagccggactgttcgcgctgacgctcgatgagatcgtgccgatcgagctcgtcgtg
cgcgacgccgagacggggctgcccaaggaggacgaagacggcctcgtgaagacgagggca
ccattccgacgcaacccgaccgcgacagagaagaagtccgggctggagggcccccagccc
tcctctcaagctgtgactctgctcgcggaactcgagaaggcgaagaccaaagacctttgg
cgactgctcgtctcactgaacatccgtcacgtcgggccggtcgcggcgagggcgctggcg
cagtggttcggttcactcgacgcgatccgcgcggcctctcgcgacgagctcgccgctgtg
gaaggagtcggcggcatcatcgccgactccttgctcgcgtggttcgatgtcgactggcac
caggacatcgttcgtcgctgggccgatgcaggcgtccagtgggccacgcccggtcatccc
ggtccgggcgcggcagtcgtccagggcggtgtgttggacgggatcacggtcgtggcgacc
ggttcgctcgacgggtacacccgagatggagcgcaggaggccatcctcaaggcgggcggt
aaggccgcgtcgagcgtctccaagaagacggacttcgtcgcggccggtcccggagcgggg
tcgaagctggggaaggcggaggagctcggcatccgcatcctcgatgccgctcagttccac
atcctcgtcacggaggggccggacgctctgggatga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (13)   

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