KEGG   Micropterus salmoides (largemouth bass): 119890642
Entry
119890642         CDS       T07309                                 
Symbol
tdp1
Name
(RefSeq) LOW QUALITY PROTEIN: tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
msam  Micropterus salmoides (largemouth bass)
Pathway
msam03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:msam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    119890642 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:msam03400]
    119890642 (tdp1)
DNA repair and recombination proteins [BR:msam03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     119890642 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 119890642
NCBI-ProteinID: XP_038557930
Position
Unknown
AA seq 621 aa
MSQDSQHGKWTISSSDDDDEVLPLSGTTTSKPHRPAVTNHSSHWSGSPPSPKLQPVTVEV
KPEPANTPGSSLVIGSEARQSAVVNQLNPVKYETSPSLAGKRKKEVSDGSGWALSDSDDD
DGDVKGKSLSNLPKRASPSPKTKKAKVENERPPSPHGRLYYXDEPEDFFESSMPCLNDTY
RFYLNKVTGLDKKYNSGALHIRDILSPLFGTLKESVQFNYCFDIAWMVEQYPSEFRDRPV
LIVHGDKREAKARLIQQAQPFPHVRFCQAKLDIAFGTHHTKMMLLWYEEGFRVIILTSNL
IRADWYQKTQGMWISPMFPQLPKGSSASAGESPTFFKRDLLEYLASYRAPELEEWIQRIK
EHDLSETRVYLVGSTPGRYVGSDMERWGHLRMRKLLYDHTEPIPGEEKWPVIGQFSSIGS
MGLDKTKWLAGEFQRTMTTLGKSSFRPDPPMHLLYPSVEDVRTSLEGYPAGGSLPYSIQT
AQKQLWLHSYFHGWKANTTGRSHAMPHIKTYMRASPDFTQLAWFLVTSANLSKAAWGALE
KNNTQVMVRSYELGVLYVPSAFNMKTFPVHKNPFPLVSSSSGFPVPFDLPPTSYSPKDQP
WIWNISYSQAPDTHGNIWVPS
NT seq 1866 nt   +upstreamnt  +downstreamnt
atgtctcaggacagtcaacacggcaagtggaccatatccagcagtgatgacgatgatgag
gttcttcctctttccgggactacaacctctaagccccaccgacccgctgtaaccaatcac
agctcccattggtctgggtctccccccagccccaaactgcagccagtcactgttgaggtg
aaaccagaaccagctaacacccctggatcctcacttgttatcggctctgaagccagacag
tcagcagtagttaaccagctgaatccagtgaagtatgaaactagtccgtcattggctgga
aagcggaagaaagaggtgtcagatggctcaggctgggctctctcagatagtgatgatgat
gatggagatgtaaaggggaagagtctcagtaatttaccaaaaagggcatctccgagccca
aaaacaaagaaagcgaaggtggagaacgagcgacctccaagtccccacggccggctgtac
tatnatgacgagccagaggacttttttgaatccagtatgccttgtctaaatgacacctac
aggttttacctcaacaaagtcacaggcctggacaagaagtacaacagtggagctctgcac
atcagagacattctctctccattatttgggacccttaaagaatctgttcagtttaactac
tgctttgatattgcttggatggtggagcaatacccatcagagtttagggaccgtccagtt
ctgatcgtccatggagataagagggaggccaaggcccggctgatccagcaggctcagccg
tttccacatgttcgattctgccaggccaagctggatattgcttttggaactcaccacacg
aagatgatgttgctgtggtacgaggaaggcttcagagtcatcattctgacctccaacctc
atcagagcagactggtaccagaaaacacaagggatgtggataagccccatgtttccacag
ttaccaaagggcagcagtgcgagcgcaggtgagtcaccaaccttctttaagagggacctg
ctggaatacctggcatcgtaccgcgccccagaacttgaggagtggatccaacggatcaaa
gagcacgacctttcagagaccagggtttatttggtcggctcaaccccagggagatatgtt
ggttcagacatggagcgctggggccacctgaggatgaggaagctgttgtatgaccacaca
gagcctattcccggtgaagaaaaatggcctgtgattggccagttctccagcatcggctct
atgggactggataagaccaaatggttggcaggggaatttcagcgcaccatgaccacgctg
gggaaatcctcttttcgcccggacccccccatgcacttgctgtatccatcagttgaagat
gtgagaactagtttagaaggctacccagcgggaggctctcttccctacagcatccagaca
gcgcagaaacaactctggctccactcctactttcacggttggaaggcgaatacgacagga
aggagtcacgccatgccacacatcaagacatacatgagggcctcaccagatttcactcag
cttgcctggttcctcgtcacaagtgccaacctgtccaaagcagcgtggggtgcactggag
aagaacaacactcaggtgatggttcggtcatatgagctgggagtcctctacgtgccctct
gcctttaacatgaagaccttccctgttcacaaaaatccatttcctctggtctcctcctcc
tctggtttccctgtgccctttgacctccctcccacaagctactctcctaaagatcagcct
tggatctggaacatttcgtacagccaagcccccgacactcacggcaacatctgggttccc
tcctga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (5)   

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