KEGG   Manduca sexta (tobacco hornworm): 115450230
Entry
115450230         CDS       T07401                                 
Name
(RefSeq) non-canonical poly(A) RNA polymerase protein Trf4-1
  KO
K03514  non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
Organism
msex  Manduca sexta (tobacco hornworm)
Pathway
msex03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msex00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    115450230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msex03019]
    115450230
   03016 Transfer RNA biogenesis [BR:msex03016]
    115450230
Enzymes [BR:msex01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     115450230
Messenger RNA biogenesis [BR:msex03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     115450230
Transfer RNA biogenesis [BR:msex03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    115450230
SSDB
Motif
Pfam: MTPAP-like_central PAP_assoc NTP_transf_2 PAP_NTPase Polbeta
Other DBs
NCBI-GeneID: 115450230
NCBI-ProteinID: XP_030034085
Position
4:complement(1566788..1598563)
AA seq 616 aa
MDPAVAWYQPEQEGPAKRLWLRIWETQSEIDKMNLKNLENANPNVNKAQDFIPINDVNGE
SRNNNYFNPARRKVNDNRASTFNLNKNHDALIGEYGGCPWRIPNYIYKPGVLGLHEEIEH
FYMYMSPTETEHMVRTTVVTRIRGAILALWPQARVEVFGSFRTGLYLPTSDIDLVVIGQW
EKLPLWTLERELVVQDIAEKESIKVLEKATVPIVKMTDKYSDVKVDISFNMSSGVKSAEL
IKHFKEKYPVLSRLVMVLKQFLLQRDLNEVFTGGISSYSLILMCISFLQLHPRPERMRQQ
HNLGVLLIEFFELYGRKFNYVKTAIRVKNGGSYVSKDEIQKEMNDGHRPSLLCIEDPLTP
GNDIGRSSYGALQVKQAFDYGYIILQQAAGVGGGGGAAHSMLGRVVRVTDHVLQYRRWVR
DTFEPYFFPHRHPRDLRDLRELRDLRDLRDLRDLRDLRDLRALDSPSPSPDPSDSEQEWS
DSGSRVANSPPVGGGGGGAVGVVGMAGARPTSPPPLSALQCSSPTPRRVSAHQNAIIHHI
TSNSDFNNIPSGVIQRYGGVGGVGGVGGAGAVGAGAGAAESGGRARAAGGGRAALSLPTA
APRARRRRHYAHHPQR
NT seq 1851 nt   +upstreamnt  +downstreamnt
atggatcccgccgtcgcgtggtatcagcccgagcaggaaggacccgcgaagcgactgtgg
cttcgtatctgggaaactcaaagtgaaatagacaaaatgaacttgaaaaacttagagaac
gctaaccccaatgtgaacaaagctcaagactttataccaataaacgatgtgaacggtgaa
agtagaaataacaattattttaaccctgcgcggaggaaagtgaacgataaccgcgcttcg
acttttaacctgaacaaaaaccacgatgccctcataggcgagtatgggggctgcccgtgg
cggatacccaactatatctacaagccgggagtgctggggttgcacgaggagatcgagcac
ttctacatgtacatgtcgccgacggagacggagcacatggtgcgcacgacggtggtgacg
cgcatccgcggcgcgatcctggcgctgtggccgcaggcgcgcgtcgaggtgttcggctcc
ttccgcaccggcctctacctgcccaccagcgacatcgatctcgttgttattggtcaatgg
gagaagttgcccctgtggacgctggagcgcgagctggtggtacaagatatcgcggagaag
gagagcatcaaggtgctggagaaggcgaccgtgccgatcgtcaagatgaccgacaagtac
tcggacgttaaggtggacatatcgttcaacatgagcagcggcgtcaagagtgcggaactg
atcaagcatttcaaggaaaaatacccagtactatcccgcctcgtgatggtgctaaagcag
ttcctactccaacgggacctaaacgaggtgttcacgggcggcatctcgtcgtactccctg
atcctgatgtgcatcagcttcctgcagcttcacccgcggccggagcgcatgcgccaacag
cacaacctcggcgtgctgctcatagagttcttcgagctgtacggacgcaagttcaattat
gtgaagaccgcgatcagggtcaagaacggcggctcgtacgtgtccaaggatgagatacag
aaggagatgaacgacggccaccgtccctcgctgctgtgtatagaggacccgctgacgccc
ggcaacgacatcggccgctcgtcttacggcgcgctgcaggtcaagcaggccttcgactac
gggtatataatcctgcagcaggcggccggggtgggcggcggcggcggcgcggcgcactcc
atgctggggcgcgtggtgcgcgtcaccgaccacgtgctgcagtaccggcgctgggtgcgc
gacacattcgagccctacttcttcccgcaccgacacccgagagatctgcgggatttgaga
gaactgagagatttacgagatctgagagatttgcgggatttgagagatttgcgagatcta
cgcgcgctcgatagcccctcaccatcaccggatccctccgatagtgaacaggagtggtca
gacagtgggtcccgcgtggcgaacagtcccccggtcggcggtggcggcggtggtgcggtg
ggtgtggtggggatggcgggcgcgcggcccacgtcgccgccgccgctgtcggcgctgcag
tgctcgtcgcccacgccgcgccgcgtctccgcgcaccaaaacgccatcatacaccacatc
accagcaactcggacttcaacaacataccttccggtgtaatccagcggtacggtggtgtg
ggcggtgtgggtggtgtcggtggcgcgggcgcagtgggcgcgggtgcgggcgcggcggag
agcggcgggcgcgctcgcgcggcgggcggcgggcgcgcggcgctctccctccccaccgcc
gcgccgcgcgcgcgccgccgccgccactacgcgcaccacccgcagcgatga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (9)   

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