KEGG   Neomicrococcus aestuarii: BHE16_04915
Entry
BHE16_04915       CDS       T04559                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
nae  Neomicrococcus aestuarii
Pathway
nae03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BHE16_04915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nae03400]
    BHE16_04915
Enzymes [BR:nae01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BHE16_04915
DNA repair and recombination proteins [BR:nae03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BHE16_04915
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID ResIII MFD_D3 Cas3-like_C_2 RecG_dom3_C PBP_like_2 UB2H
Other DBs
NCBI-ProteinID: APF40470
UniProt: A0A1L2ZMP5
Position
complement(1114930..1118571)
AA seq 1213 aa
MTTTATHPVLALDGLRQALSADSILPVLRTVAGRSFDERTQDLEIAAPTGLRPIVCAEVA
DAVNPSGGVVLAITATGREAEDLTAALAAYLPAGTVAEFPSWETLPHERLSPRSDTVGRR
LSVLRRLHDGKNDAAARLKVIVAPIRAVVQPLVKGLSELRPVRVAVGEEYEFTALVKALA
DAAYARVDLVTHRGEFAVRGGMIDVFPPTMDHAIRIDFFGDEVDQMRYFSVADQRSIPGE
GPREIIAPPCRELLITPAVMSRAARLQEQLPGAAEMLEKIAGGIAVEGMESLAPVLVDAM
VPFMSELPQGSIAVLMEPERVRVRSHDLAATNEEFLAAAWNTAAHGGAAPVDISAVDASL
NSVASVLSSGNFASLGETRDAAVKSHVSWWSMTSLGADTELLPDAGTLRIQAHEPHGFAG
NVKEMLNFLSAQVNDDWRVVVVTDGAGPAQRIAELLHDANIPAHRVEYLKEEPTTHLVEI
TTAQAGHGFIFPELKLALLTEADLLGRSSAYAAKSGKKLAARRRNAVDPLQLTEGDFVVH
EQHGIGRFVELIQRKIAGSDGMREYLVLEYAASKRGAPGDRLFVPTDQLDQLTRYVGGET
PTLSKMGGADWSQTKTKARKAVKEIAGELIKLYSARMASRGHAFAQDTPWQHELEDAFPF
AETPDQLTAINEVKADMEKEIPMDRLVSGDVGFGKTEIAVRAAFKAVQDGKQVAILVPTT
LLARQHFETFSERFAGFPVRVKALSRFQTAKESKEIIAGLKEGSVDVVIGTHRLLSKEVE
FKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATP
PEERHPVLTYVGPYTDKQVTAAIRRELMREGQVFFVHNRVSSIDKVAAQLRELVPEARVE
IAHGKMSETRLEQIMVDFWEKKFDVLVSTTIIETGLDIQNANTLIVDRADNYGLSQLHQL
RGRVGRGRERAYAYFLWNSEKPLGEVALERLKAVAAHNELGSGFQLAMKDLEIRGAGNLL
GGEQSGHIAGVGFDLYLRLVGEAVADYRGEKEQVTADVRIDLPVNAHLPHDYVPSERLRL
EAYRKLAAAHDETQIQDVVEEFTDRYGELPEVVSNLIDIARLRLLATSAGLTDIAVQGNF
VRVSPISNLPESRQVRFERMYPGTLMKPAMDLALIPKPKTARVGGRDLVDQEIIQWANEL
VKNIFVLENATAK
NT seq 3642 nt   +upstreamnt  +downstreamnt
atgacgactacagccacgcatccagtccttgctcttgatggcctccgtcaagcgttgtcc
gccgattccatccttcccgtcttgcgcaccgttgcgggccgttcctttgacgagcggacg
caagacctcgagatcgcagcccccaccggtctgcgccccattgtgtgcgctgaggtggcg
gatgcagtgaatcctagcggcggcgtcgttctggccatcaccgcaaccggccgcgaagcc
gaagatctcaccgcggcgctcgccgcttatttgccagcgggcaccgtggctgaattccca
tcctgggagacgctgccccacgaacgcctgtcaccgcgctcggatacggtgggccggcgg
ctttctgtattgcgtcgcttgcatgacgggaagaacgacgccgcagctcgccttaaggtg
atcgtggcgccgattcgcgctgtggttcagccgctcgtgaagggcttgagcgaactgcgt
cccgtgcgcgtcgctgtgggagaagagtacgagttcaccgccttggtgaaggcgctcgcg
gatgccgcgtatgctcgcgttgatttggtgacgcaccgtggtgagtttgcggttcgcggt
ggcatgatcgatgttttcccgcccaccatggatcatgcgattcgcattgacttctttggt
gatgaagtggatcaaatgcgttacttctccgtcgccgatcagcggtcgatcccgggggag
gggccgcgggaaattattgctccgccgtgccgcgaactcttgatcacccccgccgtgatg
tcccgcgccgcgcgcttgcaagaacagttaccaggcgctgccgagatgctggagaagatc
gcgggcggcattgccgttgaaggcatggagtctttggcgccggttctggtggacgccatg
gtgccgttcatgagcgagctaccccaggggtctattgcggtccttatggagcccgagcgg
gtacgagtccgttcccacgaccttgccgccaccaacgaagagttcttggccgctgcctgg
aacactgccgctcacggcggcgctgcacccgtggatatctccgccgttgatgcgtcgctg
aactcggtggcgagcgtattgtcctccggaaacttcgcctctctaggcgaaacccgtgac
gcagcggtgaagtctcacgtgtcttggtggtccatgaccagcttgggcgcggataccgaa
ctgttgccggacgccggtacgctccgaattcaagctcacgaaccccacggcttcgccggc
aacgtgaaggaaatgctcaacttcttgagcgcccaggtcaacgatgactggcgcgttgta
gtagttaccgatggtgctggtccagctcagcgcatcgccgagctcttgcatgatgcaaac
attcccgcacaccgtgtggagtacctcaaggaagaacccaccactcacttggtggagatc
accacggcccaagccggacacggttttatcttccctgaactgaagctcgcgctcctgacg
gaagcggatctgctgggccgctcatcggcatatgccgcaaagagcggcaagaaactggcc
gcgcgccgtcgtaatgccgtggatccgctgcaactgaccgagggcgatttcgtggtgcac
gagcagcacggtatcggcaggttcgtagaactcatccagcgcaagatcgccggatctgac
ggcatgcgcgagtatttggtgctcgagtacgcggcgtcgaagcgtggtgcgccgggcgac
cgtttattcgtgcccaccgaccagctggaccagctcacacgctacgtgggcggcgagacg
ccgacgctgtccaagatgggtggagcggactggtcgcagaccaaaactaaggcgcgcaag
gcagtcaaggagatcgccggtgagctcatcaagctctactcggcgcgcatggcctctcgc
gggcacgcgtttgcccaggatacgccgtggcagcacgagctcgaggatgcgttcccgttc
gcggagaccccggatcagctcaccgctatcaacgaggtcaaggcggacatggagaaggag
atccctatggatcgcctcgtctccggcgacgtgggcttcggcaagaccgagatcgccgtc
cgtgccgcgttcaaggccgttcaggacggcaagcaggttgctatcttggtgcccaccaca
ctgttggcgcgccagcactttgagacgttctccgagcgtttcgccgggttccccgtgcgg
gtcaaagcgctctcgcgattccagaccgcgaaggagtccaaggagatcatcgcggggctc
aaagagggttccgtggacgtagtcatcggtacgcaccgcctgctgtccaaagaagtggag
ttcaaggatctgggactcgtcattgtggacgaggaacagcgctttggtgtggagcacaag
gaagcgctcaagaagatgcgtaccaacgtggatgttcttgccatgtccgcgacgccgatt
ccacgaacacttgagatgtctttgaccggcattcgggagacctcgacgctggccactccg
ccggaagaacgtcaccccgtgttgacctatgtggggccgtacacggataagcaagtgacc
gccgcgattcgccgcgagctcatgcgtgaaggccaagtgttcttcgtgcacaaccgcgtc
tcctcgattgacaaggttgccgcgcaactccgcgagctcgttccagaagcccgcgtggag
attgcccacggcaagatgtccgagacccgccttgagcagatcatggtggacttctgggaa
aagaagtttgatgtgctggtttccaccaccatcatcgaaaccggtctggacattcagaac
gccaacacgttgattgtggaccgtgcggataactatggtctgtcccagctgcaccagctt
cgaggccgtgtgggccgtggacgtgagcgtgcgtacgcgtacttcttgtggaactcggag
aaaccgctgggtgaggtggctttggaacgtctcaaggctgttgcggctcataacgagttg
gggtcagggttccagctggccatgaaggaccttgaaatccgtggcgccggtaacctattg
ggcggcgagcagtccggccatatcgccggtgtcggctttgacttgtatctgcgcttggtg
ggtgaggctgttgccgattaccgcggtgagaaggaacaagtcacggctgatgtgcgcatt
gatctgccggtcaacgcgcacttgccgcacgattacgtgccgagcgagcgacttcgcctc
gaggcctaccgaaagctggctgccgcgcacgacgaaacccaaatccaagacgtggtggag
gaattcaccgaccgttacggcgagctgccggaagtggtcagcaacctcattgacatcgcc
cgactgcggctattggcaacaagcgccggcctcacggatattgccgttcaaggcaatttc
gtcagagtctcgcctatcagcaacttgccggaatcccgtcaggtccgttttgagcggatg
tacccgggaacgttgatgaaaccggcgatggatctggcactgatcccgaagcccaagacc
gctcgtgtgggcggtcgcgatctggtggaccaggagatcatccagtgggccaatgagctg
gtgaagaatatcttcgtactggagaacgccaccgctaagtga

  All links  
Gene (12)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (24)   

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