KEGG   Neisseria animalis: D0T90_08505
Entry
D0T90_08505       CDS       T06425                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
naq  Neisseria animalis
Pathway
naq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:naq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    D0T90_08505 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:naq03400]
    D0T90_08505 (mfd)
Enzymes [BR:naq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     D0T90_08505 (mfd)
DNA repair and recombination proteins [BR:naq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      D0T90_08505 (mfd)
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD MFD_D3 CarD_TRCF_RID Helicase_C ResIII ERCC3_RAD25_C UB2H AAA_30 SurA_N_3 Glyco_tran_WecG
Other DBs
NCBI-ProteinID: QEY25054
UniProt: A0A5P3MU12
Position
complement(1766584..1770018)
AA seq 1144 aa
MAYPLPKIREKSRWLHLSKGSLPLALARHLPEKQLKVVFAQDAEQALRLQTAWRFFRPQD
TAVFLPDWETLPYERFSPHQDLVSERLSALWLVKSGAADVLFVPVATAMQRLAPVSFLAG
RTFWLKTGQTLDVDALRKSMVDAGYSAVSNVVAAGEFAVRGGIVDLFPMGAETPYRIDLF
DDEIDSIKTFDPDTQRTLAPVSEIRLLPAHEFPTDAEAQKIFRSRFREEINANPNDAAVY
KAVSSAQFGAGVEYYLPLFFEDECATLFDYIGENALTVCMGDVHAAAARFAADVKSRFAM
AQGDETYPPLHPQHLYLTADQFAGRLKPYPQIWPDLDNTHDLPDVAVNRQSETPLAALQN
FQTAFGGRILLCAESAGRRETMLGFFAQHGLKPKSVDGWQAFLDSGAGLCITVTPLAYGF
QLPADWALLPDSHHAAASAAKPIAVITESDLYQYVAKSRTTRRKKHAQVSDGLLRDLAEI
NTGDPVVHEEHGIGRYMGLVTMDLGGETAEMMLLEYAGEAQLYVPVSQLHLISRYSGHAY
ENVQLHKLGSGAWGKAKRKAAEKARDTAAELLNLYAQRAAQEGHKFTFDEDDYLAFADGF
GYEETEDQAAAIAAVIKDLTQGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAVLAP
TTLLVEQHAQNFADRFADFPVKVAGLSRFNSSKATAQTLEGMAEGTVDIVIGTHKLVQDD
IKFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLIT
TAPSRRLAVKTFVKPFSEAHIREAVLRELKRGGQVFFLHNEVDTIANMRERLETLLPEAR
IGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPEHLTKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEIL
GEGQSGEMMQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGVTTEIKLHSPALLPDSYCPD
IHERLVLYKRLATCETVQQINAIHEELVDRFGLPEQPVKTLIESHHLRLAAKELGITVID
ATGEAATFTFGKNTRIEPADIILLMQSNKNYRFAGADKLRVEMEMEDIETKINRVKAVIS
KLKG
NT seq 3435 nt   +upstreamnt  +downstreamnt
atcgcctacccccttcccaaaatacgagaaaaatcccgctggcttcatctttccaaaggc
tcgctgccgttggcattggcgcggcacctgcctgaaaaacagctcaaggtcgtgttcgcg
caagacgcggagcaggcgttgcggcttcagacggcatggcgttttttccgcccgcaggac
accgccgtgttcctgcccgactgggaaacgctgccttacgagcgtttttcgccgcatcag
gatttggtttcggagcggctctcggccttgtggctggtgaaaagcggcgcggcggacgtg
ttgtttgtgcccgtggcgacggcgatgcagcggctcgcgccggtgtcgtttctggcgggg
cgtacgttttggctgaaaacagggcagacgctggatgtggacgcgctgcgcaaaagcatg
gtggacgcgggttacagcgcggtatcgaacgttgttgcggcgggcgaatttgccgtgcgc
ggcgggattgtggatctgtttccgatgggggcggaaacgccgtaccgtattgatttgttt
gacgacgaaatcgacagcatcaaaactttcgaccccgacacgcagcgcacgctcgcgccg
gtttcggaaatccgcctgctgcccgcgcacgagttccccaccgatgcggaagcgcaaaaa
atcttccgcagccgcttccgtgaggaaatcaacgccaatccgaacgatgcggcggtgtac
aaggccgtaagcagcgcgcagttcggcgcgggggtggaatattatctgccgctgtttttt
gaagacgaatgtgcgacgctgttcgactacatcggcgagaatgcgctgacggtgtgcatg
ggcgatgtacacgcggcggcggcgcgttttgcggcggacgtgaaatcgcgctttgccatg
gcgcagggcgacgaaacctacccgcctttgcatccgcagcatttgtatctcaccgccgat
cagtttgcaggccgtctgaaaccgtatccgcaaatctggcctgacttggataacacccat
gatttgcccgatgtggcggtcaaccgccaaagcgaaaccccgctggccgcgctgcaaaat
tttcagacggccttcggcgggcggattctgctctgtgccgaaagcgcggggcggcgtgaa
accatgctcggctttttcgcgcaacacggactgaaaccgaaaagcgtagacggctggcag
gcatttttggacagcggtgcgggattgtgcattacagtaacgccgctggcgtatggcttc
caattacccgcagattgggcactcctgcccgacagccatcatgccgctgcatctgctgcc
aagcccatcgccgttattaccgaatccgacctttaccaatacgtcgccaaatcgcgcacc
acgcggcgcaagaagcacgcacaggtttcagacggcctgttgcgcgatttggccgaaatc
aataccggcgatccggtggtgcacgaagaacacggcatcggccgctatatgggtttggtg
accatggacttgggcggcgaaaccgccgagatgatgctgctcgaatatgcgggcgaggcg
caactttatgtgcccgtttcgcaactgcacttaatcagccgctattccggccatgcctat
gaaaacgtgcaactgcacaagctcggcagcggcgcgtggggcaaagccaagcgcaaagcc
gccgaaaaagcgcgcgacaccgccgccgagctgctcaacctctacgcacaacgcgccgca
caggaaggccacaaattcacgtttgacgaagacgactatctggcctttgcagacggcttc
ggctatgaagaaaccgaagaccaggccgctgccatcgccgccgtcatcaaagacctgacc
caaggcaagccgatggaccgcctgatttgcggcgacgtaggtttcggcaaaaccgaagtc
gcgctgcgggcggcgtttgtcgccgtaatgggcggcaaacaggtggccgtgctcgcgccg
accacgcttttggtggagcagcacgcgcagaattttgccgaccgctttgccgactttccg
gtcaaagtcgccggcctgtcgcgctttaacagcagcaaagccaccgcgcaaaccctcgaa
ggtatggcggaaggtacggtggatattgtcatcggcacacataaattggtgcaggacgat
ataaaattcaaaaacttaggcttggtgattatcgacgaagaacaccggttcggcgtgcgc
cagaaagagcagctcaaacgcctgcgcgccaatgtcgatatcttaaccatgaccgccacg
ccgattccgcgcacgctcagcatggcgttggaaggcctgcgtgatttttcgctgattacc
accgcgccgagccgccgtttggccgtgaagacttttgtgaaaccgttcagcgaagcacat
atccgcgaagccgtcttgcgcgagctcaaacgcggcgggcaggtattcttcctgcataat
gaagtggataccatcgcaaacatgcgcgaacggctggaaaccctgctgcccgaagcccgt
atcggcgtggcgcacggccagttgcgcgagcgcgaattggagcaggtgatgcgcgatttc
ctgcaacagcggtttaatgtgctgctctgctccaccatcatcgaaaccggcatagacatc
cccaacgccaacaccatcatcatcaaccgcgccgacaaattcggcctcgcccaactgcac
cagttgcgagggcgcgtcggccgcagccaccaccaggcctacgcctacctgcttacgccc
gagcaccttaccaaagatgcggaaaaacgccttgatgccattgccgccgccgacgaactc
ggtgccggattcacgctggcgatgcaggatttggaaatccgcggcgcgggcgaaatcttg
ggcgaaggccaaagcggcgaaatgatgcaggtcggcttcacgctctacaccgaaatgctc
aaacaagccgtgcgcgatttgaaaaaaggccgccagcccgatttggacgcgcccttgggc
gtcaccaccgaaatcaaactgcacagccccgccctcttgcctgacagctactgccccgac
atccacgagcggctggtactctacaaacgccttgcaacctgcgaaaccgtgcagcagatt
aacgcgattcatgaagaactggtcgaccgcttcggcctgcccgaacaacccgtcaaaacc
ctcatcgaaagccatcatctgcgcttggccgccaaagaactcggcatcaccgtcattgat
gccaccggcgaagccgcaacgtttactttcggcaaaaacacgcgtatcgaaccggccgat
attattcttttgatgcaaagcaacaaaaactaccgctttgcaggggcggacaagctgcgg
gttgaaatggagatggaagacatcgaaaccaaaatcaaccgcgtcaaagcagtcatcagc
aaactcaaaggctga

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (14)   

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