KEGG T08117: 124981089

Sciurus carolinensis (gray squirrel): 124981089

Entry

124981089         CDS       T08117

Name

(RefSeq) pre-mRNA-splicing factor CWC22 homolog

K13100

pre-mRNA-splicing factor CWC22

Organism

ncar Sciurus carolinensis (gray squirrel)

Brite

KEGG Orthology (KO) [BR:ncar00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ncar03041]
    124981089
Spliceosome [BR:ncar03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    124981089
Complex C
   U4/U6.U5 tri-SnRNP related factors
    124981089

SSDB

Motif

Pfam:

MA3 MIF4G Cnd1

Other DBs

NCBI-GeneID:

124981089

NCBI-ProteinID:

XP_047403224

Position

3:complement(128434514..128499627)

AA seq 906 aa
MKSSVAQIKHSSGHDRRENYNSYQRTSSPEDRYAEQERSPRDRDYFDYSRSDYEHSRRGH
SYDGGMESRSRDREKRRERERDMDRKRSRKSPSPGRRSPEPSGTQSSAQDEPTAKKKKDE
LDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISII
IQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNF
RKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECG
LKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPIILDGLDLVE
EDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEDKYRAIKKEILDEGDSDSNTDQDAES
SEEEEEEEEEGEEDEEGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFP
ESQTKELCNMILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETN
KLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNAR
LKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDVE
QNKSSLTSSSSASSSSESDSSDSDSDSSESSSESSSEESDSSSTSSQSSASAKDVRKKGQ
GKTRSKEVDKPIRNQQTNDRRQEERRAEQKHQELRTERERRSEKHRSQNSRDLNWRDPVT
KYMSDRSIHSDGNSYSRIGNNRDEDVYFDLENRRGDPKKKRRERRNSFSENEKHRLLNQD
SENFRRKDRSKSREKNRKHSGSKSDEDRYQNGAERRWEKSGRYSEHSRESKKNQDRRREK
SPMRQK

NT seq 2721 nt +upstreamnt +downstreamnt
atgaaaagtagtgtggcacagataaaacattcttctggtcatgacagaagggaaaactat
aattcatatcagaggacctcttctcctgaagacagatatgcagaacaagaaaggtcccct
cgggatagagattactttgattatagcaggtcagactatgaacattcaagaagaggacat
tcttatgatggtggcatggaatcacgaagcagggatcgagaaaaacgcagagagagagaa
agagatatggatcggaaaaggtcccgaaaatctccatctcctgggagaagaagcccagaa
ccatcaggaacccagagttctgctcaggatgaacctactgcaaagaagaagaaagatgag
ttggatcctcttctcactagaactggtggagcatatattcctcctgcaaagcttagaatg
atgcaagaacagattacagataagaacagcttagcatatcagaggatgagctgggaggcc
ctaaagaagtcaatcaatggtcttatcaacaaagtcaacatttccaatataagtattatt
attcaagagcttctccaggaaaatatagttagaggaagaggactgctgtccagatctgtt
ttgcaagcccagagtgcttctccaatcttcacccatgtttatgcagcattggtggcaata
atcaactcaaaatttccacaaattggagaattaatcctcaagaggttgattcttaatttt
cgaaaaggctatagaagaaatgataagcaactttgtctgactgcttcaaaatttgtggca
catcttattaaccaaaatgtggcacatgaggttttatgcttagagatgctcactttgctt
ctggaaagaccaacagatgatagtgttgaagtagccattggttttctcaaagaatgtggc
ctcaaattaacacaagtttcaccacgaggcatcaatgctatctttgaacgccttcgaaac
attctgcatgaatctgaaattgacaaaagagttcaatatatgattgaagtgatgtttgcc
gtacggaaggatggattcaaggatcatcctattatcctggatggacttgacttggttgaa
gaagatgatcagttcacccatatgcttcctttggaggatgactataatccagaagatgtt
cttaatgttttcaagatggatcctaattttatggaaaatgaagacaagtacagagctatt
aagaaggaaattcttgatgaaggagatagtgattcaaacacagaccaagatgctgaaagt
agtgaagaggaggaagaagaagaggaagaaggagaagaagatgaggaaggacagaaagtg
actatccatgacaagacagaaattaatctagtctcatttcgtcgtacaatatatcttgct
attcagtcgagtttagattttgaagaatgtgctcacaaactgctgaaaatggagtttcct
gaaagtcaaacaaaagaactgtgcaatatgatacttgattgctgtgcccaacaaagaaca
tatgagaaattttttggcttactggctgggcgattttgcatgctaaaaaaggaatacatg
gaatcctttgaaagcatattcaaagagcaatatgatacaatccatcgcttggaaacaaac
aaattgagaaatgttgctaagatgtttgctcaccttttatacactgattcacttccatgg
agtgttctagaatgtataaaactgagtgaagaaaccactacatcatctagtagaattttt
gtcaaaatatttttccaggaactgtgtgaatacatgggtcttcctaaacttaatgcaaga
ttaaaggatgaaaccctacagccattctttgaaggattattaccacgagataatccaaga
aatactcggtttgccatcaacttctttacttctataggtcttggaggtttaacggatgaa
ctgcgcgagcatctcaaaaatacaccaaaggtcattgtggcacaaaaaccagatgttgag
caaaataaatcctccctgacctcttcgtcttcagcatcatcctcttctgagtctgactcc
tccgactctgattctgacagcagcgagagcagttcagagtcttccagtgaggagagtgac
tcttcatccaccagtagtcagagctctgcctcagctaaagatgtaagaaagaagggacaa
gggaagactagaagtaaagaagtagataaaccaatcaggaaccaacaaacaaatgatagg
agacaagaagaaagaagagcagaacaaaagcaccaggaattaaggactgagagagaaaga
aggtcagaaaaacacagaagtcaaaattcaagagatctgaattggagagatcctgtaaca
aaatacatgtcagacagaagtatacattcggatggaaatagttatagtagaattggaaat
aaccgagatgaggacgtatactttgatttggaaaatagacgtggtgatccaaaaaagaag
agaagagagagaagaaattctttttctgaaaatgagaaacacagactcctaaatcaggac
agtgaaaattttagaagaaaagatagatcaaagtcaagggaaaagaatagaaaacattca
ggctctaaaagtgatgaggataggtatcagaatggcgccgagagacgatgggaaaagtct
ggcagatactccgaacattccagagaatcaaagaaaaatcaggaccggcgaagagagaaa
tctccaatgaggcaaaaatga

All links

Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (9)   

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