KEGG   Notothenia coriiceps (black rockcod): 104943187
Entry
104943187         CDS       T04920                                 
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
  KO
K12875  apoptotic chromatin condensation inducer in the nucleus
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03013  Nucleocytoplasmic transport
ncc03015  mRNA surveillance pathway
ncc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104943187
  09122 Translation
   03013 Nucleocytoplasmic transport
    104943187
   03015 mRNA surveillance pathway
    104943187
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncc03019]
    104943187
   03041 Spliceosome [BR:ncc03041]
    104943187
Messenger RNA biogenesis [BR:ncc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104943187
Spliceosome [BR:ncc03041]
 Complex C
  Other components
   EJC/TREX
    104943187
SSDB
Motif
Pfam: SAP
Other DBs
NCBI-GeneID: 104943187
NCBI-ProteinID: XP_010766830
UniProt: A0A6I9MYY0
Position
Unknown
AA seq 693 aa
MADEDITLDGKPLQSLRVADLKAALEQRNLPKSGQKNALIKRLKGALMLENLQKSSSSHS
GLQPNSQIGEEMSQNSFIKQYLAKQQELLHERLEREAQQDEAVDESSAVLEEDEDHSEDN
DSSSYVSDKKNRSIPPKPLLPRAEERGGGDAGMVHGMMACGPDMGLGPTLPPQEFLEAPG
ARMQRATFHQGHKEPPAPSPPRAVASLSVRVLGQPDRQGLPPAVPRAQEKEGTAPSEPGS
AHPVLHLSRSAGVSGGSQAREDSDDDDSDDESEDDEDWGPGPGGARRGNRAPPQPQQMPP
SFPSTVARSKRKLQPPQHIPPPQVHHTPMQLRHPTPPPSPPPDLFPLPDTPKQSPPDTED
QEGDRPEASRGPRGPSFPPSTMQRQDSDSSSRSSSPEPSMKRRPGPLSLLAHRMDSEGAF
RAAEATSAVDLSGEATAHSTAAFASFGDSPLKRLERKRLQENRDVEEERRLKEEKEREQQ
QKQERERMKIQEQEIERGRLEEERKRLEEEEKQREKERKRQEEEKERKHQEEEKERKHQE
EEKERKHQEEEKERKHQEEEKIREGKLQKEKERKHQEEEKIREGKLQKEKERKHQEEEKI
REEKERKQETAHKGRVAVTEAQDSGSSSDSDSSSHSSSSSSGVTTGPARQLKKPKQGHKA
EEEKKKTDLSKGAEKQHVSTRSVSIDEIHLKVG
NT seq 2082 nt   +upstreamnt  +downstreamnt
atggcggacgaagatattacgcttgatggaaaacctctacaatcgctccgggttgcggat
ttaaaagctgctttggagcaaagaaacctgcccaagagcggacagaaaaatgcactcatt
aagcgactgaaaggggctctgatgctcgaaaatctccagaagtcgtcgtcctctcacagt
gggctgcagcccaactcgcagattggtgaggagatgagccagaatagcttcataaaacag
tacctggctaaacagcaggagctccttcacgagaggctggagagagaggcccagcaggac
gaagcagtcgacgaaagctcagccgtgctggaggaggacgaagaccattcggaggacaat
gacagttcctcctatgtcagtgacaagaagaatcgctccataccccccaagcccttattg
ccccgggcagaggagagaggaggaggagatgcagggatggttcacggaatgatggcgtgt
ggccccgacatgggcctgggtcctaccctccccccccaggagttcctcgaggctccagga
gctaggatgcagcgagccacctttcaccagggacacaaggagcccccggccccgtctccc
ccccgcgccgtagcctccctgtcggtgcgcgtcctgggccagcccgaccgccaggggctg
ccccccgccgtgccgcgagcccaggagaaggagggcaccgcaccgagcgaaccgggatcc
gcgcaccccgtcctccacctcagccgatcagctggagtctcaggggggagtcaggctcgc
gaggacagcgatgatgacgacagtgacgacgagagcgaggatgatgaggattgggggccc
ggtcccggcggggcgcggaggggaaacagagcgccgccccagccgcagcagatgcctccc
agcttcccgtcaacagttgccagatccaaacgcaagctccagcctccccagcacatccca
ccaccacaggtacaccacacaccaatgcaactgcgccaccccacccctcctccctctccc
ccccctgacctgtttcccctacctgacactcccaaacagagcccaccagacacagaggac
caggaaggagataggcccgaggcttcgcgtggtcccagggggccgtctttcccaccttcc
accatgcagaggcaagactctgactcgagctctcgttccagcagtccggagccttctatg
aagcgaaggcccgggcccctctctctgctcgcacacaggatggactctgagggggctttc
cgtgcggcagaggccacctccgctgtggatctgtcaggagaggcgacggcacactccact
gccgcgtttgccagttttggtgattctccgctgaaaagattggagagaaagaggctccaa
gagaacagagacgtggaggaagaaaggcgcctgaaggaggagaaagagagagaacaacag
cagaagcaggagagagaaagaatgaagatacaagagcaggagatagagaggggacgcctg
gaagaagagaggaaacgcctggaagaggaggagaagcagcgtgaaaaagagcgaaagcgc
caggaagaggaaaaggagaggaaacaccaggaagaggagaaggaaaggaaacaccaggaa
gaggagaaggagaggaaacaccaggaagaggagaaggagaggaaacaccaggaagaggag
aagatacgagaggggaaactgcaaaaggagaaggagaggaaacaccaggaagaggagaag
atacgagaggggaaactgcaaaaggagaaggagaggaaacaccaggaagaggagaagata
cgagaggagaaggagaggaaacaggagacagcccacaaaggcagggtggctgtgactgag
gcccaagactcaggttcctcatcggactccgactcctcttcacactcgtcctcctcctcc
tccggggttacaaccggccctgccagacagctgaagaagccaaagcaaggacataaagca
gaggaggagaagaagaagactgaccttagtaaaggggcagagaaacaacacgtttcaaca
aggtcagtatccatcgatgaaatacacttaaaggtggggtag

  All links  
Gene (60)   
   RefGene (57)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (66)   

Download RDF
DBGET integrated database retrieval system