KEGG   Novosphingobium humi: PQ457_07530
Entry
PQ457_07530       CDS       T08806                                 
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nhum  Novosphingobium humi
Pathway
nhum03410  Base excision repair
nhum03430  Mismatch repair
nhum03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:nhum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    PQ457_07530 (recJ)
   03430 Mismatch repair
    PQ457_07530 (recJ)
   03440 Homologous recombination
    PQ457_07530 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nhum03400]
    PQ457_07530 (recJ)
DNA repair and recombination proteins [BR:nhum03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     PQ457_07530 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     PQ457_07530 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PQ457_07530 (recJ)
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB
Other DBs
NCBI-ProteinID: WCT78973
Position
complement(1606413..1608119)
AA seq 568 aa
MDMAQTAAGGLSDDIITQLLLARGVAREDLSRHRTPTLRAFLPDPSEFRDMELAAMRIAD
AIERREAITIYGDYDVDGATSAALLIRLIRMLGHDARHYIPDRLLEGYGPTGEALVRLGA
EGAQLIVTVDCGAMAHEALAMAADAGVEVIVVDHHKCSAELPQALALVNPNRLDESDIGA
AHGHLAAVGVAFLLGVALVRVLRGRGWFAGRAEPDLFALLDLVALGTVADVAALHGLNRA
LVAQGLKVMARRENIGMAALIDASRLNRAPTATDLGFALGPRVNAGGRVGEATLGVRLLT
TQDAEEAREIAAQLSRLNEERRAIEMAVQEAAELQVERQGNRTVMVLSGKGWHPGVIGIV
AGRIKEKTGKPTLVIALDDDGVGKGSGRSISGVDLGAAIIGARELGYLVAGGGHAMAAGL
TVAADRLEAFADWLDDRLAGDVSRAQGAQSLLLDLAVAPRGLQPELVELLESAGPYGMGW
PGPRVAVGPVRVVKADVVGADHLRMIVRGEDGASFKAMAFRSAQTEMGQTLIHGDHGRKL
WLAGRARIDDWGPRRAAELHVDDAAWAD
NT seq 1707 nt   +upstreamnt  +downstreamnt
atggacatggcgcagaccgctgcgggcgggctgagcgatgacatcatcacccaattgctt
ttggcacgcggtgttgcgcgcgaggacctgtcccgtcaccgcacgcccaccttgcgcgcc
tttctccccgatccgtccgaattccgcgatatggaattggccgcaatgcgtattgccgat
gctatcgaacgccgagaggccatcaccatatacggcgattatgacgtggatggggcaacc
agcgcggctttgctgatccggctgatccgcatgctgggccatgatgcgcgccattatatc
cccgaccgcctgctcgaaggctatggcccgaccggcgaggcgctggtgcgtctgggggcc
gagggcgcgcaattgatcgtgacggtcgattgcggggccatggcgcatgaggctctggcc
atggccgcagacgccggggtcgaggtgatcgtggtcgaccatcacaaatgcagcgctgag
ttgccccaggcgctggcgctggtgaaccccaaccgactggatgaaagcgacattggcgcg
gcccacggccatctggcggcggtcggcgtggcgtttttgctgggcgtggcgctggtgcgg
gtgctgcgcgggaggggatggtttgccgggcgggccgagccggatctgtttgccctgctc
gatctggtggcgctgggcacggtggccgatgtcgccgcgctgcatgggttgaaccgggcg
ctggtggcgcaggggttgaaggtgatggcgcggcgcgagaatatcggcatggccgcgctg
atcgacgcgagccggttgaaccgcgcgcctacggccacggatctgggctttgcgctgggg
ccgcgcgtcaatgcaggcggccgcgtgggcgaggccacgctgggcgtgcgcctgctgacc
acgcaggacgccgaggaggcccgcgagattgccgcccagctctcacgcttgaacgaagag
cgccgcgccatcgaaatggccgtgcaggaggccgccgaattgcaggtggagcggcagggc
aaccgcaccgtgatggtcctgtcgggcaagggatggcatcccggcgtgatcggcatcgtg
gccgggcggatcaaggaaaagaccggcaagccgacgctggtgatcgccttggatgatgat
ggcgtgggcaagggatcgggccgctcgatttcgggcgtcgatctgggcgcggcgatcatc
ggggcgcgtgaactgggctatctggtggcgggcggcggccatgcgatggcggcgggcctg
accgtggcggccgaccggctggaggcttttgctgattggctggatgaccgtctggccggc
gatgtatcgcgcgcgcaaggggcgcagtcgctgctgcttgatctggccgtggcgccgcgc
gggctgcagcccgaactggtcgaattgctggagagcgcaggcccctatggcatgggatgg
ccggggccgcgcgtggcggtggggccggtgcgcgtggtcaaggccgatgtggtgggtgcg
gaccatctgcgcatgatcgtgcggggcgaagatggcgccagcttcaaggcgatggccttt
cgcagcgcccagaccgagatgggccagacactgatccatggcgatcatgggcgcaagctt
tggctggccgggcgggcacgaatcgacgattgggggccgcgccgcgccgccgaattgcat
gtcgatgatgcggcatgggcggactag

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (4)   

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