KEGG   Nymphalis io (European peacock): 126773124
Entry
126773124         CDS       T08495                                 
Name
(RefSeq) regulator of nonsense transcripts 1
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
niq  Nymphalis io (European peacock)
Pathway
niq03013  Nucleocytoplasmic transport
niq03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:niq00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    126773124
   03015 mRNA surveillance pathway
    126773124
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:niq03019]
    126773124
Enzymes [BR:niq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     126773124
    5.6.2.5  RNA 5'-3' helicase
     126773124
Messenger RNA biogenesis [BR:niq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     126773124
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     126773124
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD ATPase UvrD-helicase Helicase_RecD AAA_16 NPHP3_N AAA_22 SRP54 nSTAND3 AAA_5 UvrD_C_2
Other DBs
NCBI-GeneID: 126773124
NCBI-ProteinID: XP_050349703
Position
14:165268..172856
AA seq 1033 aa
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLTSSNQ
VNGLGRTDLNSKLSSVGNTIAELQFEEEDEALYSSKELPDHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAHNPGSHFMSTSMFDAREAMVPGSVYDRARPPRDPLAAVRPERAERAPVPSAAFPAPR
LRPPAEPPRARRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGLLSQDS
TYQGGFRARAGQY
NT seq 3102 nt   +upstreamnt  +downstreamnt
atgagtgtcgacgcgtatggtccaagttctcaaacgttgacatttttagacacagaggaa
gcagatcttatcggtgctgatacccaaggatcggaatttgaatttactgatttcactctt
ccgtcgcaaagccaaacacaagcatcccaacacgatcatggactaacatcatccaaccaa
gtgaatggccttggacggacagatcttaactcgaaactttcaagtgtagggaatactata
gcggaattgcaatttgaggaagaggatgaagcactgtacagtagcaaggaactaccagat
catgcatgcaaatattgtggtattcacgaccctgcaaccgttgttatgtgcaatatatgt
aacaaatggttttgtaatggacgaggtaatacctctggatcacacataattaaccatcta
gtaagagcgaaacacaaggaagcagcgttgcaccgtgatggacctctcggagaaacatta
ctggaatgctattcatgtggtgctcggaatgtttttgttcttggctttatacctgccaag
gctgattcagttgtcgtacttctgtgtcgtcaaccctgtgccgcgcaaagttctcttaaa
gatatgaattgggatcaagaacaatggaaaccattaatttctgatcgtgcatttctatcg
tggcttgtgaaagtaccatcagaagcagaacaaatgagagcccgtcaagtaacacctcag
caaataggacgcctcgaagaactttggcgtgacaatgtcgatgctactttccaagattta
gaaaagcctggagtagatgaggaaccgcatcaggttctgttaagatatgaagatggatat
caatatcagaatatcttcggtccacttgtaaaattagaagctgattatgataagagactc
aaggaatcacaaacacaagaaggaatagaggttcgttgggatgttggtctcaataaaaaa
acaattgcatactttacgctagccaagaccgatagcgacatgaagctcatgcatggagac
gaactgagactgagatatgttggtgagctccacaaagcctggtcaggtgttggtcatgtg
atcaaagtgcctgataattatggagacgatgttggtctggagctgaaaagtggagctgga
gctcctcttgactgtacttcgaattttgtagttgattttatctggaaaagtacatctttt
gacaggatgcagttggctctccgcaagtttgcagtggacgattcgtcggtttccggctac
atataccgccgcctgttagggcacgaagtggaggaagtcctgtttcgcgttcatctgccg
aaacactttagtgcgccgaacctacctgacctgaacaggtctcaggtatatgctgtcaaa
catgctcttcaacgtcctctttccttgatccaaggccctccgggaacaggcaaaaccgtc
acttcggcgaccattgtgtatcaactcgttcggcaaaacggcggcccagtactggtttgt
gcgccgtctaatactgctgtagaccaactcactgagaaaatacatagaactggacttaaa
gtagtccgtctttgcgcaaaatctagagaagcaatggagtcttctgtgtccttcttggca
ctgcacgaacaggcacgtgccttgggttcggccgacagcgagttacgcaagttgacgagg
ttgaaagaagaagctggcgagttatctgccgccgatgagagacgctatcgagcccttcgt
cgagctgcagagagacgactcttggatgctgctgacgtggtttgcaccacatgtgtcggg
gcaggcgatccgagagtagctcgaatgcgtttccaatcaatcctcatagacgaaggcatg
cagtctactgagcccgaatgtatggtaccggtggtgctgggagcgaggcaactgattctt
gtcggcgatcattgtcagttggggcccgtcgtaatgtgcaagaaagccgccaaggcgggc
ctgagccagagtctgttcgagcgacttgtggtccttggcattcgtccttttaggttagag
gtacagtatcgtatgcatcctgaactgtcacggtttccgtcggatttcttttacgaaggt
tctcttcagaatggagtgagtgcagaagaaagacgtttacacaaaatcgattttccttgg
ccgcgaccagatagaccgatgttcttttatgtcactcaaggacaggaggagatagccggc
tcgggaacgtcttacttaaatcggacggaagcggccaacgtagaaaagcttacgacccgc
tttttaaaagccggcgtccggcccgaacagatcggtatcataacgccgtacgagggacag
cgatcgtatctcgtgcaacatatgcagtaccagggcagcttgcacgccaaactctaccag
gagatcgaagtggccagcgtggacgcctttcagggccgagaaaaagacatcatcatcatg
tcctgcgtccgctcgaacgaacaccagggcatagggttcctgagcgacccgcgtcgactg
aacgtcgccctgacgcgggccaagtacggcctcatcgtagtcggcaacccgaaggtcctc
agcaagcagcccctttggaaccacctgctcgccttctacaaggagcgccgcgtgctcacc
gagggcccgctgtcgaacctcaaggagtccgccatccagttcgccaagcccaagaagctg
gtgaacgcgcacaaccccggctcgcacttcatgtccacgtcgatgttcgacgcgcgcgag
gccatggtgccgggctcggtgtacgaccgcgcgcggccgccgcgcgacccgctggccgcc
gtgcgccccgagcgcgccgagcgcgcgcccgtgccgagcgccgccttccccgcgccgcgc
ctgcgcccgcccgccgagccgccgcgcgcgcgccgccgcccgccgcgcctgtcgcaggag
ccgctgtcgcagcagccgccgctgtcgctgtcgcagggcgcctcgcagcccgacttcagc
caggagtcggccgcgcccgactgcccgtcgcagcccgacggccttctgtcgcaggactcc
acgtaccagggcggcttccgcgcgcgcgccggccagtactga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (19)   
   Pfam (19)   
All databases (23)   

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