KEGG   Nicotiana tabacum (common tobacco): 107760371
Entry
107760371         CDS       T04643                                 
Name
(RefSeq) transcription elongation factor SPT4 homolog 2 isoform X1
  KO
K15171  transcription elongation factor SPT4
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    107760371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nta03021]
    107760371
   03019 Messenger RNA biogenesis [BR:nta03019]
    107760371
Transcription machinery [BR:nta03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     107760371
  RNA polymerase I system
     107760371
Messenger RNA biogenesis [BR:nta03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     107760371
SSDB
Motif
Pfam: Spt4 PylS_N TMEM52
Other DBs
NCBI-GeneID: 107760371
NCBI-ProteinID: XP_016433894
UniProt: A0A1S3X1U4 A0AC58SX57
Position
16:147289851..147295127
AA seq 117 aa
MGSQQAAQIPTSFGHELKACLRCCLVKTYDQFRESGCENCPFFQMEEDHERVMECTTSNF
TGLISVMDPTRSWAARWLRIARYVSGCYALLVSDELPDDLQNLCKDQNIPYAPPKRI
NT seq 354 nt   +upstreamnt  +downstreamnt
atgggaagccaacaagcagcacaaattcccaccagttttggccatgaactaaaggcttgt
ctccgttgctgccttgtcaaaacgtacgaccagtttagggaatcaggatgtgagaactgt
ccctttttccagatggaagaagatcatgagcgtgttatggagtgcactacttctaatttt
actggtttgatctcagttatggatccaactaggagctgggcagcccggtggcttcgaatt
gcacggtatgtctctggttgttacgcgcttttagtgtctgatgagcttccggacgatttg
cagaatctttgtaaagatcaaaatatcccatatgctcctccaaaacgcatctga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (2)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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