KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420907
Entry
139420907         CDS       T10872                                 
Name
(RefSeq) rab11 family-interacting protein 1-like isoform X1
  KO
K12484  Rab11 family-interacting protein 1/2/5
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    139420907
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ocla04131]
    139420907
Membrane trafficking [BR:ocla04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    139420907
SSDB
Motif
Pfam: C2 RBD-FIP DUF4635
Other DBs
NCBI-GeneID: 139420907
NCBI-ProteinID: XP_071027422
Position
12:59799609..59841142
AA seq 1544 aa
MMSLIELNDDQRWVPTHVNVTVLRARGLRTKGKHGSRYVYTIIQVGKDKYTTGLVEKATV
PEWNEECCFELLPGILEAGGRSAFPSGSGDLVLTVMHRVLIGLDVFLGQAIVPLDKIFQD
GMCPRDEWLKLNSKASRKEKERGEIQVTVQFTRNNMTASMFDLTMKDKPRSTFGKLKDRV
TGRKRDDMESSSAIVPGRFAALSSSLGQPFGEGSGGGEDPGEVEVAEEKRSKVKDFFLGK
GKLRRSSDTWSCSSLASESSVSSTTSESHCPPSLGLGLLVDPPSSPIYSSKVKDTHHGDT
DLAKKVLTTTQSSPKILTHKRAFSDEASRITTTAIPRPCPAVESLKGHGMTLSQSSLCIN
GSHVYGSEPVGPKGSSTLPSKLVLLEKCSPLSRSLQNLTKRSEDKGSAGEGRRWSFDKVK
KDEKDEEKEAEPPVSQFQSARVGGRPVQAAAPMLSSTTTVDSADKGKKLRKTLFSGGRSD
SLPAKSELSQGSPPPEGRLRGWFGSSDSQNKPRLEVSPKVESESDTPPPLPPRSPIPLQC
SSPSASFTGHSSPDSAHPTNPFTPSLSLTPDPISPFNPFLPRMQCNPFFEDLIAEEGQKS
PPFATCSPVTPLCHSTALPSVTSPTHDPAVQIEMAAIWRDQPRPVARQTSLPALLPTPAT
ASPPNPFTSRSISESGGGEWDESFDAFASSRLNSPKGSPTNHPSIATSRQAQVRSTPPYE
SYTIPPIEEMRMSEEEEPPRLPPRRPIIRSLVNERPSDSWLHRGQELAVQKEACLLSQTG
AASLQHTREWGHKRHTPSPHLYPSPGKDLVSSDLLDFHTVHSQHYANMSPESPSPFKSED
EFKKFDYEPLRDEDDKIIFTEQDLWPDATDSIISLASEDTTDASPTVRKYAIVKNTSHSE
LKDLSLPVMLLNSERTVADLLTKSCPKHSKSGLKTLDIASTPPDLTTDSFSIHPDKPTKS
RNNNYESPPLTLEDLNKNKSNSDFCFIDSASDTSPSPSDMMTVHTLKSLGGICPQPPQDT
PIALSHEQMMLYAEDMLIVQKTSTIDVNSAVIVNLPEVSSLCQDNCLDGGCELNTSRRDS
ASNMKSISIFKPDSLNIERETVELKDTQSPMDRNGNITKSKIDSSKLDPLCHVRSFPVSS
QMEMQQEVVRNKQEVSQPLAKRTNPVNESSPRGTSSHRSLKGMIRELHGNSDANSPGKGL
GESPLHQSQSSGQIISESIEGPFSYQPTKSPFSSPLSPDRETTLKAATLFVSSQKIHTHS
STQSIPKENCLTEHSSSKYAGAISFEDLHAKVAPNVRSPMSARLRPGTTVHASNPCASNP
SSATPSLATETNGQAKLPPTPVPPSIHHPPTVRPSTGASATLAVAPYTSSSFSSSSSYTT
AQPLVDARHTLLPEETQPASSLPRQESSPHPVKPLTTTASQGEKKECRSVLEKLKSSIHP
GRSAQQTLAVAETEKKIEESLADSSAQYEQLTNMELISLLLQQEMDMEKQQVASDQQAAM
LEKHEAELKKIKAQVRDLEDYIDKLLVQIMEQTPTLLQVRSRHK
NT seq 4635 nt   +upstreamnt  +downstreamnt
atgatgtcacttatagagttgaacgatgaccagagatgggtgcctacacatgtgaatgtc
actgtccttcgtgcaaggggtttgcggacgaagggcaagcacgggagccgttatgtttac
accatcattcaggttgggaaggataaatacaccaccggtttggtcgaaaaggcgactgtg
ccggagtggaatgaggaatgttgtttcgaacttctccccggaatactggaggctgggggt
cgcagtgcatttccttcagggagcggcgacttggtcctcaccgtcatgcaccgggtgctt
atcggacttgacgtgtttcttggtcaagcaatcgtccccctggataaaatatttcaagat
ggaatgtgtcctagagatgaatggctcaaactcaactccaaggccagccggaaggagaag
gagcgtggcgagatacaggtaacggtccagttcacgcgcaacaacatgacagccagcatg
ttcgaccttaccatgaaggacaagccgcgctctaccttcggcaaactcaaggaccgcgtg
acggggaggaagagggacgacatggagtcctcctcggctattgtgccgggacgcttcgcc
gccctgtcgagttccctggggcagccattcggggaggggagcggagggggagaggacccc
ggggaggtagaggtagccgaggagaagcggagcaaggtgaaggattttttcctgggtaag
ggaaagctgcggaggtcttctgacacatggtcgtgttcgtcgctggcctcagaaagcagc
gtgtcgtccacgaccagtgaaagccactgtcccccttctctgggtctaggcctcctggtg
gacccccccagctcccccatctacagcagcaaagtcaaagacacccaccacggagataca
gacctagctaaaaaagtgcttaccaccacacagtcttccccaaagatactgacccacaag
cgagccttcagcgacgaggcaagtaggatcaccacgactgccattccccggccctgtcct
gctgtggagtccctcaagggtcacggtatgactctctcccaatcctctctgtgcatcaac
ggaagccacgtctatggatctgaaccggtgggtcccaagggctcaagcacccttccatcc
aagctggtcctgctcgaaaagtgctcccctctctctcgttcgctgcagaacctcacaaag
cggagcgaggacaagggttctgccggcgagggccggcgctggtccttcgacaaggtaaag
aaagacgagaaggatgaggagaaggaggccgaacctccagtctcccagtttcaaagtgct
cgggtggggggtcggccagtgcaggcagcagccccgatgctgtcttctactaccacggtg
gactcagcagacaaagggaagaagctcagaaaaacgttattctccggagggaggagtgat
tctctacctgccaagtccgagctgagccagggttctcctccccctgaggggagactgcga
ggctggtttggctccagtgactcccagaacaagccaaggctggaagtttctcctaaggta
gaaagcgaatcagacacccctcctcctctcccccctcgctcccccattcccctccagtgc
tcgtctccctctgcttctttcactggccattcctcgcccgacagtgcccatccaactaac
cccttcactccctctctctctctgacccctgaccccatctctcccttcaaccccttcctc
ccgcgtatgcagtgtaaccccttttttgaggacctcattgcagaagagggccagaagtcc
cccccttttgctacctgctcccccgtcacacccctctgtcattccacagctttgcctagc
gtcaccagtcccacccacgatcccgccgtgcaaattgaaatggccgccatatggcgagac
cagcccaggcctgtagccaggcagacgtccctccctgccttacttccgacaccagcgacg
gctagcccccccaatccgtttacgtctcgctccatatcagagagtgggggaggagaatgg
gatgagtcctttgatgcctttgcctccagcagactgaattcgccaaagggctctcctacc
aatcacccttcaatagcaacctcaaggcaagcccaagtaagaagcactcctccatatgag
agttacactattccacccattgaggagatgaggatgagtgaagaagaagagcctccacga
ttgcctccacggaggcccataatacggtctctggtgaacgagagaccttctgacagctgg
ttgcacaggggtcaggaactggcggtgcagaaagaggcctgtctcctgtcacaaacaggc
gcagcttccctacagcacacaagagaatgggggcacaagagacacacaccaagtccccac
ctgtacccaagcccaggcaaagaccttgtcagtagtgacctgttggactttcataccgta
cactcacaacattatgccaacatgtctccagagtctccatctccattcaagtctgaagat
gagttcaagaagtttgactatgaaccattacgagatgaagatgataaaattatatttact
gagcaggacctatggccagatgcaacagattcaataatatcgttggcttcagaggatacg
acggacgccagtcccactgtaagaaaatatgctattgtaaagaacacttcacattctgaa
ctcaaagacttatctctgccagtaatgcttcttaatagtgaaaggactgttgccgatcta
ctgactaagtcttgcccaaaacactctaaatcaggtcttaagactctagacattgcttca
actccaccagacctaacaacggactcgttctcaattcacccagataagcccaccaagtcc
agaaacaacaattatgaatcacctccgctaaccttagaagaccttaataaaaacaaaagt
aactcagatttttgttttattgactctgcttctgatacttccccatctccatctgacatg
atgacagtgcataccctcaaaagtttaggtggcatttgtcctcaacctccacaagatact
cccatagcattatctcatgagcagatgatgctatatgcagaagatatgctaattgttcag
aagactagtactatagacgtcaactctgctgtaatagtgaacttaccagaagtctcctcg
ctttgtcaagacaattgtctagatggaggatgtgaattgaatacatcacgcagagattct
gcaagcaatatgaagagcattagcatttttaagcctgacagtcttaacatagagagagag
actgtagaattaaaagacactcaatctccaatggatagaaatggcaacattacaaaatca
aagatagacagttcaaaactagaccctttatgtcatgttagatcttttccagtttcgtcc
cagatggaaatgcaacaggaagttgtacgcaataaacaggaagtgagtcagcctctggcc
aaacgaaccaatcctgtcaatgagtcttcaccaaggggcactagttctcacagaagtctc
aagggaatgatacgggagctccacggcaacagtgatgcaaatagccctggcaaaggatta
ggtgagagccctcttcaccaatcacagtcttctgggcaaataatctcagagagcattgaa
ggaccgttctcatatcaacccaccaaatctcctttttcctcacctttgtcaccggataga
gagacaacgctcaaggcagccacattatttgtgtcctcgcaaaaaatacacacacatagt
tccactcagtcaattccaaaagaaaactgcttaacggaacattcctcatccaaatatgct
ggggcgatcagctttgaagacctccacgccaaagtagccccgaacgtgagaagccccatg
agtgccaggttaaggcctggcaccacagtgcatgcttccaacccctgtgcttccaacccc
tcctctgctaccccctccctggcaactgaaactaatggccaggctaagctgccccccacc
cctgtccccccctccatacatcaccccccgaccgtgaggcccagtaccggagccagtgcc
accttggctgtggccccctacacctcttcctccttctcctcctcttcctcctacaccact
gcccagcccttggtcgatgcacggcacacacttttgcctgaggagacacagccagctagc
agcctgccccgacaggagagcagcccccacccagtgaagcccttgaccaccacagccagt
cagggggagaagaaagagtgccggtcagttctggagaagctcaagtcttccatccaccca
ggccgctctgcccagcagacactggccgtggctgagactgagaagaagattgaggaatcg
ttagcagacagctctgcccagtacgagcagctgacaaacatggagctgatttcccttctg
ctgcagcaggagatggatatggagaagcagcaggtggcctccgaccagcaggcggcaatg
ctggagaaacacgaggcggagctgaagaagatcaaggcacaggtgcgcgacctagaggac
tacatcgacaagctgctggtgcagatcatggagcagacacccacactcctccaagtgcgc
tcccggcacaagtga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (9)   

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