KEGG   Osmerus eperlanus (European smelt): 134032361
Entry
134032361         CDS       T10927                                 
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
oep  Osmerus eperlanus (European smelt)
Pathway
oep04010  MAPK signaling pathway
oep04020  Calcium signaling pathway
oep04510  Focal adhesion
oep04518  Integrin signaling
oep04519  Cadherin signaling
oep04540  Gap junction
oep04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:oep00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    134032361 (pdgfrb)
   04020 Calcium signaling pathway
    134032361 (pdgfrb)
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    134032361 (pdgfrb)
   04519 Cadherin signaling
    134032361 (pdgfrb)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134032361 (pdgfrb)
   04540 Gap junction
    134032361 (pdgfrb)
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    134032361 (pdgfrb)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:oep01001]
    134032361 (pdgfrb)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:oep04090]
    134032361 (pdgfrb)
Enzymes [BR:oep01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     134032361 (pdgfrb)
Protein kinases [BR:oep01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   134032361 (pdgfrb)
CD molecules [BR:oep04090]
 Proteins
  134032361 (pdgfrb)
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase Ig_3 I-set Ig_2 VEGFR1-3_N_Ig-like ig V-set Ig_VEGFR-1-like_5th C2-set_2 VEGFR-1-like_Ig-like Haspin_kinase Adeno_E3_CR2
Other DBs
NCBI-GeneID: 134032361
NCBI-ProteinID: XP_062332301
Position
13:13621020..13639574
AA seq 1084 aa
MKGLVFQQTALLTAILLFCPNFHCLVLTPSDSQVVVAAGSSLTISCSGSGLATWRFRRQE
DVPLFRVEQRNSSVVLILENVTWEHTGVYECLTQAEETEEVAVFVPDPEVWFIENPHGMV
TKTSELGIIPCLVTDPRINVTLYEKDSGAALQGHFLPTQGLQAALEDRTYVCRGELDGQE
KESQAFYVFSIVVPEAIDAYINASKTVLKKGEPLTVNCTVHGVELVFFSWDHPSREVTSI
EPLTDVLSTVSMRSCLFIPRASLAHGGPYVCHVHEGVQDQSATATVNITVLERGFVAARP
AQEHNVSARWHENVELRVEIEAYPPPRIRWSKDGAAITGDNTIAMRQENETRYVTVLTLV
RVRVDQKGLYTLLVTNDDDTKEVTFDLEVKVPAQISDLSDHHLPEKKHAVTCVAEGVPTP
SILWYSCDSMLKCSNRTTAWKPLAPDPDTLSVQTNTSFNGSRKVGQVRSQVIFHKPQQWT
LRCEARNEGGVRRRDVKLVSNALFSQVAVLAAVLALVAIIIISIIILIAVWRKKPRYEIR
WKVIESVSVDGHEYIYVDPIHLPYDHGWEMPRDSLVLGRTLGSGAFGRVVEATAYGLSHA
QSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYLVTEYCR
YGDLVDYLHRNKHTFLQYYAEKSQEDSGCRESGGSTPVSQRKGYVSFGSECDGGYMDMSK
DEPTVYMPMQEQKDNIKYADIQASPYESPYQQDLYQEQGQSRVDAALGLSDSTTLSFEDL
LGISYQVAQGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDSNYISKGST
FLPLKWMAPESIFHNLYTSLSDVWSYGILLWEIFTLGGTPYPDIPMNEQFYSALKRGYRM
AKPAHASEQVYEVMKKCWEEKFEKRPEFSFLVQTMGNMLTDSYKKKYFQVNDSFFKSDHP
AVARTKTRPSSPFPTALTPTSIGPASIPDPTLFPNPYHSPSFSSPEDSLDRPPSYNDYII
PIPDPKPEEAIPDADSSSLSLEEETDSISQHTSDTFPEDERLDANQEEVPLMPSGTPEVE
DSFL
NT seq 3255 nt   +upstreamnt  +downstreamnt
atgaaagggctcgtgttccagcagacagccttgctcacagccatacttctcttctgcccc
aacttccactgcctggtgctcacccctagcgacagccaggttgtcgtagcagccgggtcc
tctctcactatcagctgttctggctcaggattggctacttggaggtttcgtcgccaggag
gatgttcctcttttccgggtagaacagaggaacagttctgtggttctgatcctggagaac
gtgacatgggaacacacaggggtgtacgagtgtttgacacaggctgaggaaaccgaggag
gtggcagtgtttgttccagaccctgaggtgtggttcatagagaacccccatggcatggtg
accaagaccagcgaactgggcatcatcccatgcctggtgacggacccccgcatcaacgtg
accctgtacgagaaggacagtggagcggccctgcagggccacttcctccccacgcagggc
ctccaggctgccctggaggaccgcacctacgtgtgccgaggggagctggacggccaggag
aaggagtcccaggccttctacgtcttcagtatcgtcgtcccggaggccatagacgcctac
attaatgcgtccaagacggtgttgaagaagggcgagcccctcaccgtcaactgcaccgtc
cacggagtggagctggtcttcttctcctgggatcaccccagcagggaggtgacctccatc
gagcccctgacggacgtgctgtcgaccgtgagcatgcgctcctgcctgttcatccccagg
gcctcgctggcccacggcggcccctacgtgtgtcacgtccacgagggcgtgcaggaccag
agcgccacggccaccgtcaacatcaccgtcctggaacgaggctttgtggcagcgcgcccc
gctcaggagcacaacgtctcagcccggtggcacgagaacgtggagctgcgggtggagatc
gaagcctaccctccgccccgcatccgctggagcaaagacggcgccgccatcaccggagac
aacaccatcgccatgcgccaggagaacgaaaccaggtacgtcaccgtgttgacgctagtc
agggtcagggtggaccagaaaggcctctacactctcctcgtcaccaacgacgatgacacc
aaggaggtgacctttgatttggaggtcaaagttccggctcagatctcagacctgtcagac
caccacctccctgagaagaagcacgcggtgacgtgcgtcgccgaaggagtccccaccccc
tccatcctctggtacagctgtgacagcatgctcaagtgcagtaaccggaccactgcctgg
aagcccctggcgcctgacccagacacactgagcgttcagaccaacacctccttcaacggg
agccgtaaggtgggccaggtgcgcagtcaggtgatcttccacaagcctcagcagtggacc
ctgcgctgcgaggcccgcaacgagggcggagtccgacggagagacgtcaaactggtctct
aacgctctattctcccaggtggcagtgctggcggccgtcctagccttggtggccatcatc
atcatctccatcatcatcctcatcgcggtgtggaggaagaagccccgctatgagatcagg
tggaaggttattgagtctgtgagtgtggacggccatgagtacatctacgtggatcccatc
cacctgccttacgaccacggctgggaaatgccacgcgacagcctggtgctgggtcgtacc
ctaggatcaggagcgtttggacgtgtcgtcgaggcgaccgcgtacggcctgagtcacgcc
cagtccagcacaaaggttgctgtgaaaatgctcaaatccactgccaggaggagtgagacc
caggctctgatgtcggagctgaaaatcatgagccaccttggtcctcacctgaacatcgtt
aacctgctcggggcctgcaccaagcaggggcccctctacctggtgacggagtactgtcgc
tacggtgacctggtggactacctgcacaggaacaagcacaccttcctgcagtactatgct
gagaagagccaggaggactctgggtgtcgggagtctggagggagcactccagtcagccag
aggaaaggctacgtgtcgtttggcagtgagtgtgacgggggatacatggacatgagcaag
gacgagcccaccgtgtacatgcccatgcaggagcagaaagacaacatcaaatacgctgac
atccaggcctctccgtacgagtccccctaccagcaggacctctaccaggagcaaggccag
agcagagtggatgcagccctgggcctcagtgattcaaccaccctcagctttgaggacctg
ctggggatcagctaccaggtggcccaggggatggacttcctggcctccaagaactgtgtg
caccgggacctggctgccaggaacgtgctgatctgcgagggcaagctggtgaagatctgt
gactttggcctggccagggacatcatgcacgactccaactacatctccaagggcagcacc
ttcctgcccctgaagtggatggccccagagagcatcttccacaacctttacaccagcctg
tctgacgtctggtcctacggcatcctgctctgggagatcttcaccctcgggggtaccccc
tacccagacatccccatgaacgaacagttctacagtgctctgaagaggggctaccgcatg
gccaagcctgcccacgcatcagaacaagtttacgaggtaatgaagaagtgctgggaggag
aagtttgagaagaggcctgagttctcctttctggtgcagaccatggggaacatgctgaca
gacagctataaaaagaaatacttccaggtcaacgacagctttttcaagagcgaccatcca
gcagtggcacggaccaagaccaggccatcctcccccttccccaccgccctcacccccacc
tccatcgggcctgcctctatccccgaccccaccctcttccccaacccctatcacagcccc
agcttctccagcccagaggacagcctggaccggcctccttcctacaacgactacatcatt
cccattcctgatcctaagcctgaagaagccatcccagatgcagactcaagttctctgtcc
ctggaggaagagacagactccatttcccagcatacatcagacacgtttccagaggatgag
aggcttgacgccaaccaggaagaggtaccgttgatgccctctggaacgccagaagtagag
gacagcttcctgtaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (14)   
   Pfam (14)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system