KEGG   Oryza glaberrima (African rice): 127757588
Entry
127757588         CDS       T08853                                 
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha, chloroplastic
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    127757588
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ogl03019]
    127757588
   03110 Chaperones and folding catalysts [BR:ogl03110]
    127757588
   03029 Mitochondrial biogenesis [BR:ogl03029]
    127757588
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ogl04147]
    127757588
Enzymes [BR:ogl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     127757588
Messenger RNA biogenesis [BR:ogl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     127757588
Chaperones and folding catalysts [BR:ogl03110]
 Heat shock proteins
  HSP60 / Chaperonin
   127757588
Mitochondrial biogenesis [BR:ogl03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    127757588
Exosome [BR:ogl04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   127757588
  Exosomal proteins of other body fluids (saliva and urine)
   127757588
  Exosomal proteins of breast cancer cells
   127757588
  Exosomal proteins of colorectal cancer cells
   127757588
  Exosomal proteins of bladder cancer cells
   127757588
SSDB
Motif
Pfam: Cpn60_TCP1 MatP_C
Other DBs
NCBI-GeneID: 127757588
NCBI-ProteinID: XP_052139090
UniProt: I1R5I7
Position
12:9009309..9013579
AA seq 578 aa
MASANAISTASLLRSFSSQGRVRRAKNGRAQRLVVRADAKDIAFDQKSRAALQAGVEKLA
NAVGVTLGPRGRNVVLDEYGSPKVVNDGVTIARAIELYDPMENAGAALIREVASKTNDSA
GDGTTTASVLAREIIKLGLLSVTSGANPVSLKKGIDKTVHGLIEELEKKARPVKGSGDIK
AVASISAGNDELIGSMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYISPQFV
TNLEKSIVEFENAKVLITDQKITSIKEILPILEKTTQLRAPLFIIAEDITGEALATLVVN
KLRGILNVAAIKAPSFGERRKAVLQDIAIVTGAEFLAKDLGLLVENATEEQLGTARKVTI
HQTTTTLIADAASKDEIQARVAQLKKELSETDSIYDTEKLAERIAKLSGGVAVIKVGAAT
ETELEDRQLRIEDAKNATFAAIEEGIVPGGGTAYVHLSTTVPAIKETIEDHDERLGADII
QKALVAPASLIAHNAGVEGEVVVEKIKDGEWEVGYNAMNDKYENLIEAGVIDPAKVTRCA
LQNAASVAGMVLTTQAIVVEKPKPKAPVAEPAEGTLTV
NT seq 1737 nt   +upstreamnt  +downstreamnt
atggcgtctgccaacgccatctccaccgcctccctcctccgctctttctcctcccagggg
agggtgaggagggccaagaatgggcgggcgcagcggctagtggtgcgggcggacgccaag
gacatcgccttcgaccagaaatcccgggcggcgctccaggccggcgtcgagaagctcgcc
aacgccgttggcgtcaccctcggcccacgagggagaaacgtagtgcttgatgagtacggc
agtcccaaagtggtaaatgatggagtcaccattgcccgggctattgagctatatgatccg
atggaaaatgctggtgcagcattgatccgtgaggttgctagcaagaccaatgattctgct
ggtgatgggactacaaccgcctctgtccttgctcgtgaaatcatcaagctgggccttttg
agtgtaacttctggtgcaaaccctgtatcacttaagaaaggaatagacaaaacagtgcat
ggtcttattgaagagctggagaagaaggctagaccagtcaagggcagtggtgatatcaaa
gctgttgcctctatctctgctggcaacgatgaacttattggatctatgattgctgatgct
attgacaaagtgggtcctgatggtgtcctttcaattgagtcttcatcatctttcgagact
actgttgatgttgaagaaggaatggagattgaccgtggatacatttcccctcaatttgtg
acaaacctcgagaaatcgatcgtagagtttgagaatgctaaggttcttattactgatcag
aagatcaccagcataaaggagattcttccaatcttggagaagacaacacagttgagagct
ccactgtttattattgctgaggacattactggcgaagctttggcaacccttgttgttaat
aagctccgaggaattctcaatgttgcagcaatcaaagccccaagttttggtgagcgacgc
aaggctgtccttcaggatattgccattgtgacaggcgctgaatttctagcaaaagacctg
ggtttgctggttgagaatgcaactgaagagcaacttgggacagcgagaaaagtcacaata
catcagactacaacaaccctcatagcggatgcagctagcaaagatgagattcaggcaagg
gttgcacagctaaagaaggaactctccgaaactgattcgatatatgatacagagaaattg
gctgagaggattgcaaagctttctggtggtgtggctgtcatcaaggttggggctgcaact
gagactgagcttgaggaccgccaactacgtatcgaggatgcgaagaatgcaactttcgca
gctattgaggagggcattgttcctggaggtggtacagcgtatgtgcatctttcaactacc
gtccctgcgatcaaagaaacaatcgaagaccatgatgagcgccttggtgcagacattatt
caaaaggcgttggtagctcccgcttcactgattgcccacaatgctggagtggaaggggaa
gtggtagttgagaagatcaaggacggtgagtgggaagtcgggtacaatgcgatgaacgac
aagtatgagaacttgattgaggcgggtgttattgacccagctaaggtgacgagatgcgcg
ctccagaatgccgcctcggtggctggaatggtccttaccacacaggccattgttgtcgag
aagccgaagcccaaggctcctgttgctgagccggcagagggaacccttaccgtctaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (7)   

Download RDF
DBGET integrated database retrieval system