KEGG   Oryza glaberrima (African rice): 127762225
Entry
127762225         CDS       T08853                                 
Name
(RefSeq) nuclear poly(A) polymerase 4-like isoform X1
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    127762225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ogl03019]
    127762225
Enzymes [BR:ogl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     127762225
Messenger RNA biogenesis [BR:ogl03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     127762225
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 MTPAP-like_central Nrap_D2
Other DBs
NCBI-GeneID: 127762225
NCBI-ProteinID: XP_052142614
UniProt: I1NYP3
Position
2:7063994..7069960
AA seq 683 aa
MAGSFVAVRGKPRSSPKRSGGGGADPPLSLAMPTVADLHKTAELEKFLVEAGLYEGEEES
AKREEVLREIDQIVKEWVKKVTIQKGYSEQMVKEANAVLFTFGSYRLGVHGPGADIDALC
IGPSYVKREEEFFVMLYGALSEMEEVTELQPVPDAHVPVMKFKFRGLPIDLLYASVSLPV
IPPDFDISQGSVLCDVDEATVRSLNGCRVADQILRLVPNAEIFRKTLRCLKYWAQRRGVY
SNVTGLLGGVSWALLVARVCQLYPNAVPSMLVSRFFRVFTQWQWPNPVMLCAIENDDNLG
FAVWDPRKNPRDRSHVMPIITPAYPCMNSSYNVSTSTLRVIMEQFQFGNKICQEIELNKA
SWSSLFEPFQFFEAYTRYLVVDIVADDDDDLRLWKGWIESRLRQLTLKIERDTKGMLQCH
PNPCEYADPSIQCAHCAFYMGLSRKEGMKIRGQKFDIRGTVDEFMHEIGMYTQWKSGMDL
AVTHVRKKEIPLYVFEQGCQKTRPPTPICAEQQDQSDKNDSEVCTTTASLVGQLKRKYHS
VGGADVDSFKSVRRASVSPACEEASIQLHDDANFGLTNCSTSPHGSEGSTVSGNSCAAVG
TIGLVDETSLPGCLMPNVENDPIRTILEQAPSESVVEKDERKLEGIESLASSNCTEFMEV
AEVVAGTILTENGDIRLSGHEVI
NT seq 2052 nt   +upstreamnt  +downstreamnt
atggcgggatctttcgtcgcggtcagggggaagcctcggtcgtccccgaagcggagcggc
ggcggcggcgcggatccgcccttgtctctggccatgccgaccgtcgccgatctccacaag
acggctgagttggagaagttcttggttgaagccggcctttatgaaggggaggaggagtcc
gcgaaacgggaggaggttcttcgggagattgatcagatagtcaaggaatgggtgaagaag
gtcactattcagaaaggatatagtgagcaaatggttaaagaggcaaatgcagtccttttc
acttttggatcttacagactgggggttcatgggcctggagcagacattgatgcactatgt
attggaccctcatatgtgaaacgagaggaggaattttttgtcatgctatatggcgcatta
tcagaaatggaagaagtgactgaactgcaacctgtacctgatgctcatgtaccagttatg
aaattcaagtttcgtgggctaccaattgaccttctctatgccagtgtatctcttccagta
ataccaccagattttgacatctctcaaggatctgtactttgtgatgttgatgaagcaact
gttcgaagtctcaatgggtgcagggtggcagaccagattcttcgacttgttccaaatgcg
gagatcttccggaaaacactcagatgtttgaagtactgggcacagagaagaggagtttat
tctaatgttactggtttgctggggggtgtcagctgggccctattggttgctcgtgtctgc
caactttatcccaatgctgtgccaagtatgctggtttcaagattcttcagagttttcacc
cagtggcagtggccaaatcctgtgatgctttgtgccattgagaacgatgataaccttggc
tttgctgtgtgggatccacgtaagaatcctcgtgatagatcacatgttatgcctatcatc
acaccagcatatccatgcatgaactctagttacaatgtttcaactagcacattgagggtt
attatggagcaatttcagtttggtaataagatttgtcaggaaattgagcttaacaaggct
agctggagttctttgtttgagcctttccaatttttcgaggcatatacaagatatctagtg
gttgacattgttgcagatgatgatgatgatcttcggctttggaagggatggattgaatct
cgattgagacagctgactctaaagattgagcgggacactaaagggatgctgcaatgccat
cctaacccatgtgaatatgcagatccttcaatacagtgtgctcactgtgccttctacatg
ggcttatcaaggaaagagggaatgaaaatacgtggtcaaaaatttgatatccgtggaaca
gtagacgagtttatgcatgaaattggaatgtatacacagtggaaatccgggatggatcta
gctgtcactcatgtccgtaagaaggagatccccctttatgtatttgaacagggctgccag
aaaactcgtccaccaacgccaatatgtgcagagcagcaagaccagtctgataaaaatgac
tctgaagtttgcacaacgacagcatctctggtgggtcagctcaagcgaaagtatcattct
gttggaggtgctgacgttgactcattcaaatctgttagaagggcttcagttagcccggct
tgtgaggaagcatcaattcagttgcatgatgatgcaaattttggactgactaattgctcc
acttcaccacatggatctgaggggtccactgtatcaggcaacagctgtgcagcagttggc
actattggtttggttgatgaaactagcttacctggctgcttgatgcccaatgttgaaaat
gatccaattcgaacaattttagagcaggcgccttcagaaagtgtggttgagaaggatgaa
agaaaactagaaggaattgaaagcttggcaagtagcaactgtactgaattcatggaggtt
gcagaagtggtcgctgggacgatccttactgagaatggtgatatacgcttaagtggacat
gaagtgatctga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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