KEGG   Oryza glaberrima (African rice): 127763732
Entry
127763732         CDS       T08853                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03420  Nucleotide excision repair
ogl04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    127763732
  09124 Replication and repair
   03420 Nucleotide excision repair
    127763732
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ogl04121]
    127763732
   03400 DNA repair and recombination proteins [BR:ogl03400]
    127763732
Ubiquitin system [BR:ogl04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     127763732
DNA repair and recombination proteins [BR:ogl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      127763732
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_SPT8 NBCH_WD40 WD40_RFWD3 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_Nup120_160 Beta-prop_WDR75_2nd Beta-prop_RIG_1st WDR54 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 127763732
NCBI-ProteinID: XP_052144478
Position
2:11669603..11675236
AA seq 473 aa
MWCEAVRRRERGELGARRFETAARARRTASLALSNRKEFATPHNGAVNSLQVDLIERRYL
LSGASDGSAAIFDVQNAIEYEAGFIAKHRSILLVDKQHENGHKFAVSMAVWYPVDTGLFV
TASFDQYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVRLCDIASG
AFTHTLSGHRDGIMSLEWSTSSEWILMSGGCDGAIRFWDIRRAGCFLVLDQSWSQLGRRP
PFLEGTSDKDPLNSLQPSSSSKIYSAQQRTGKSKKQSHKLHKSQIPGHGHIQQRLHPGLS
SSQNRATAHYGAVTGLRTTTDGMYLLSSGSDSRLRLWDIDSGCNTLVNFEAMRLQTSKPL
QLAVTEDPSLVFIPCMASIKAYNLWSGMTFQTFRGHYEPVNCCYYSAQEQELYTGSNDRQ
ILVWSPSTPAFTEMVYFLFLVIIYLSVEFSYILSNSNFSGVVGHIGILLHKLF
NT seq 1422 nt   +upstreamnt  +downstreamnt
atgtggtgtgaggcggtgaggcggagggaacgcggggagcttggggcacggcgcttcgag
accgccgcccgggcgcgccgcaccgcctcactcgcactctccaaccgcaaggagttcgcc
accccgcacaacggcgccgtcaactctctccaggttgatttgatagagcggcggtacctg
ctctcgggcgcatcggatggatcagccgctatatttgatgtgcagaatgcgatcgaatac
gaagctgggttcattgccaagcataggagcattctccttgtggacaagcagcatgaaaat
ggccacaagttcgcggtatctatggccgtatggtatcctgtggacactgggctgtttgtg
acagcttcttttgatcagtatgtcaaagtgtgggatactaattcgactcaagtcgtaatg
gattttaagatgcctggaaaagtgtacagtgcagcaatgtccccaattgcaacaacacat
atgctgatcgctactggaagtgcagatgttcaggtccgtttatgtgatattgcttctgga
gcctttacccacacgttgtctggtcatcgtgatggtatcatgtctttggagtggtctact
tcaagtgagtggattttgatgagcggtggttgtgatggagcaatacgattttgggacata
agacgagctggatgctttcttgttcttgatcaatcatggtctcaactaggaaggcgacct
ccttttcttgagggcacctcagataaggatcctttgaactctttacaaccttcatcttct
tcaaagatttactctgcacagcagaggacaggcaagagtaagaaacagtcacacaaattg
cacaaaagtcaaatccctggacatggacatatccaacagagattgcaccctggtttgtct
tctagtcaaaatcgtgcaacggcgcattatggtgctgttacgggattaagaacaactaca
gatgggatgtaccttcttagctcaggttctgattctcgcttaagactttgggatattgat
tcaggctgtaatactttggtcaattttgaagctatgcgattacagactagcaaaccgcta
caattagctgtcactgaggatccatcacttgtattcatcccatgcatggcaagcattaag
gcgtacaatttatggtctggtatgacatttcaaacattccgtgggcactatgaacctgtt
aattgctgctactatagtgcacaagaacaagagctttatactggcagcaatgacaggcaa
attcttgtgtggtctccatcaactccagcgtttactgaaatggtatattttctatttctt
gttatcatatatctttctgtagaattttcctacatcctatcaaattcaaatttctcagga
gtagtcgggcatattgggatattattgcataagcttttttag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (28)   
   Pfam (28)   
All databases (40)   

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