KEGG   Oryza glaberrima (African rice): 127767870
Entry
127767870         CDS       T08853                                 
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03440  Homologous recombination
ogl03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    127767870
   03460 Fanconi anemia pathway
    127767870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ogl03032]
    127767870
   03400 DNA repair and recombination proteins [BR:ogl03400]
    127767870
Enzymes [BR:ogl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     127767870
DNA replication proteins [BR:ogl03032]
 Eukaryotic type
  DNA Topoisomerases
   127767870
DNA repair and recombination proteins [BR:ogl03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     127767870
   FA (Fanconi anemia) pathway
     127767870
SSDB
Motif
Pfam: Topoisom_bac Toprim Zn_ribbon_GRF Zn_ribbon_Top1 Zn_ribbon_GRF_2
Other DBs
NCBI-GeneID: 127767870
NCBI-ProteinID: XP_052149294
Position
3:complement(3271522..3288858)
AA seq 928 aa
MHHGGGGGAIRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRAC
HMLVTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARKCQW
LVLWLDCDREGENIAYEVIDICAGANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFAD
AVDARQEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILSYGPCQFPTLGFIVERFWE
IQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVEEPMATVQNVRNQE
KLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHS
IVHEQVAHPNWGTYAQRLLDPEARLWRNPSNGGHDDKAHPPIHPTKFSAGETNWTDNHKK
LYELVVRHFLACCSQPAVGAETTVEIDIASEQFNASGRVVLAKNYLDVYRFDSWGGTLLP
TYIIGQQFVPTTLTLDSGMTRPPPLLAEADLLGCMDKAGIGTDATMHDHIKKLLDRCYAT
KDANTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKSEVLENCLQQ
MKACFLDARANKVKLFDAMGTFFARSSRPVNETQNSIETVRPCAACNESEMFLKQRPTGE
FMVGCRGFPQCRNVVWLPRSLSGAAVTDQVCPTCAPGPVYKIQFKFRRRDIPPNFDVDHL
GCIGGCDDILKELMELSRFGSHSQTATPARNQSQTASGVRQGSSRQDLHTSFHPAVQFTN
GQTPVVNSQGFRSTHTQSSGNASGQVQCTSCREPCVLRTANTEANRGRKFYKCQNLACGF
FAWEDDVENSAPRGRGGRGRGGRSGSRQSSASASAGRRGGTQGRGRRGRGRNADGMMFVA
ATGEPVYGSCFICGDPTHFANVCPNLGR
NT seq 2787 nt   +upstreamnt  +downstreamnt
atgcaccacggcggcggcggcggcgcgatccgcgtgctgaatgtggcggagaagccgtcg
gtggcgaagtccgtcgcggagatcctgtcgcggccgtcgggcgggatgcggtcgcgggag
gggcggtcacggtacaaccgcgtcttcgagttcgattactccatcggcggccgcgcctgc
cacatgctcgtcacctccgtcacggggcacctcatggagctcgagttcgacgaccggttc
cgccgctggcactcgtgcgaccccgctgatctcttccacgcccccgttcgcaagtccgta
ccccaggataagcaagacataaaaagaacattggaagaggaagccaggaagtgtcagtgg
cttgtgctttggcttgattgtgatagagagggtgagaatatcgcatatgaagtgattgat
atatgcgcaggtgccaacagccgcctcaacatttggagagctcgtttctcagctttgatt
gacagggaaatccatgaagctgtgcaacatcttgacagacccaacaagctctttgctgat
gctgttgatgcaagacaggaaattgaccttcgcatcggtgcctccttcacaaggttccag
acaatgctgctgaaagatgcatttgttcttgatgacactggtgatgataggaatataatt
ctgagttatggtccttgccagtttccaaccctaggatttattgttgagcgtttctgggag
attcaagctcatgaacctgaagagttctggacaataaattgttcccacacttcagatgaa
ggcactgcatcttttggttggatacgtggtcatttgtttgattactcatctgctgttgtg
atctatgaaatgtgtgttgaagaaccaatggcgacagtgcaaaatgtaaggaatcaagag
aaactaaaataccccccatatccactaagtaccatagagcttcagaaacgtgcctctagg
tacttcagaatgagttccgagcacacaatgaaggtggctgaggaactttatcaagctgga
tttattagttatcccaggacagagactgataacttctctccaaacactgacctacattcc
atcgtacatgaacaagtggctcatccaaattggggaacatatgctcagcgtcttttggat
cctgaagcaagactttggagaaaccccagcaatggtggtcacgatgacaaggcacatcct
cctattcatccaacaaaattttcagctggggaaacaaattggactgataatcacaaaaaa
ttgtatgagcttgttgttcgccatttccttgcttgttgctcccaacctgcagttggagct
gaaacaactgtggaaattgacattgctagtgaacagttcaatgcatcagggcgcgttgtt
cttgctaaaaattatttggacgtatatcggtttgactcatggggcggtacattacttccg
acatacatcattggacaacagtttgttccaacaactttaacgcttgattctggaatgact
cgcccacctcctctgcttgctgaagctgacctccttggttgtatggataaagcaggaatt
ggcactgatgcaacgatgcatgatcacataaaaaagttacttgaccgttgttatgcaacc
aaagatgcaaatacacggttctccccaacaaatctaggcgaggcattggtgatgggttac
gatgaaatggggtatgagctttggaaaccttatttaagatcaatgatggaagctgatatg
aaatcagttagcattggtacaaagagtaaatcagaagtacttgagaattgtttgcagcaa
atgaaggcttgttttcttgatgcaagggcaaacaaggtgaaactctttgatgcaatggga
acattctttgcaaggtcaagtagaccggtcaatgagacacagaactccatagaaactgtg
agaccatgtgctgcatgcaatgaatctgaaatgtttctgaagcaaaggccgactggcgaa
tttatggttgggtgtcggggcttccctcaatgtagaaatgtagtttggctcccacgatct
ctttcaggggctgctgtgactgatcaagtttgtcctacctgtgctccaggtccggtttat
aagattcaatttaagtttcggcgaagggatattccaccaaattttgatgtcgatcacctc
ggttgtattggtggatgtgatgacatactcaaagagctcatggaattaagtagatttgga
agtcatagccagactgcaacaccagcaagaaatcagagccagactgcaagtggtgtaagg
caggggtcttcaaggcaagatttacatactagctttcatccagccgtgcaatttactaac
ggacaaacacctgttgtgaattctcaaggttttcgttcaacccatacccaaagctcagga
aatgcatcaggtcaagtacagtgcacatcatgtcgagaaccctgcgtattgcgaactgct
aatacagaggctaacagggggaggaagttctataaatgccagaatcttgcatgcggcttt
ttcgcatgggaagacgatgtggagaactctgcgccgaggggccgtggcgggcgtgggcgg
ggcgggcgcagtggcagcaggcaatcatctgcatctgcatctgcagggcggagaggcggc
acccaagggcgaggcaggaggggcagaggacggaatgctgatggcatgatgttcgttgcg
gcgacgggcgagcccgtttacggcagctgcttcatctgcggcgaccctacccacttcgct
aatgtctgccccaacctcgggagatag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (10)   
   RefSeq(pep) (10)   
DNA sequence (10)   
   RefSeq(nuc) (10)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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