KEGG   Oryza glaberrima (African rice): 127771704
Entry
127771704         CDS       T08853                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
  KO
K10570  DNA excision repair protein ERCC-8
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03420  Nucleotide excision repair
ogl04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    127771704
  09124 Replication and repair
   03420 Nucleotide excision repair
    127771704
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ogl04121]
    127771704
   03400 DNA repair and recombination proteins [BR:ogl03400]
    127771704
Ubiquitin system [BR:ogl04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     127771704
DNA repair and recombination proteins [BR:ogl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      127771704
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_EIPR1 NBCH_WD40 WD40_RFWD3 ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_Nup120_160 WDR54 Beta-prop_WDR75_2nd Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 127771704
NCBI-ProteinID: XP_052153595
Position
1:33929293..33932376
AA seq 455 aa
MWCEAVRWRERGELGARRFETAARARRTASLALSNRKEFTTPHNGAINSLQVDLTERRYL
LSGASDGSAAIFDVQNATEYEAGFIAKHRSILLVDKQHENGHKFVVSMAVWYPVDTGLFV
TASFDQYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVHLCDIASG
AFTHTLSGHRDGIMSLEWSTSSEWILMSGGCDGAIRFWDIRRAGCFLVLDQSRSQLGRRP
PFLEGTSDKDPLNSLQPSSSSKIYSAQQRTGKSKKQSHKLHKSQIPGHGHIQQRLHPGLS
SSQNCATAHYGAVTGLRTTTDGMYLLSSGSDSRLRLWDIDSGCNTLVNFEAMRLQTSKPL
QLAVTEDPSLVFIPCMASIKAYNLWSGMTFQTFRGHYEPVNCCYCSAQEQELYTGSNDMQ
ILVWSSTPAFTEMPLQEDDGKRQTDFVVDDDNWSD
NT seq 1368 nt   +upstreamnt  +downstreamnt
atgtggtgtgaggcggtgaggtggagggaacgcggggagctgggcgcacggcgcttcgag
accgccgcccgggcgcgccgcaccgcctcgctcgcgctctccaaccgcaaggagttcacc
accccgcacaacggcgccatcaactccctccaggttgatttgacagagcggcggtaccta
ctctctggcgcatcggatggatcagccgctatattcgatgtgcagaatgcaaccgaatac
gaagccgggttcattgccaagcacaggagcattctgcttgtggacaagcagcatgaaaat
ggccacaagttcgtggtatcgatggccgtatggtatcctgtggacactgggctgttcgtg
acagcttcttttgatcagtatgtcaaagtgtgggatactaattcgactcaagtcgtaatg
gattttaagatgcctggaaaagtgtatagcgcagcaatgtccccaattgcaacaacacat
atgctgatcgctactggaagtgcggatgttcaggtccatttatgtgacattgcttctgga
gcctttacccacacgttgtccggtcatcgtgatggtatcatgtctttggagtggtctact
tcaagtgagtggattttgatgagcggtggttgtgatggagcaatacgattttgggacata
agacgagctggatgctttcttgttcttgatcagtcacggtctcaactaggaaggcggcct
ccttttcttgagggcacctcagataaggatcctttgaactctttacaaccttcatcttct
tcaaagatttactctgcacagcagaggacaggcaagagtaagaaacagtcacacaaattg
cacaaaagtcaaatccctggacatggacatatccaacagagattgcaccctggtttgtct
tctagtcaaaattgtgcaacggcacattatggtgctgttacaggattaagaacaactaca
gatgggatgtaccttcttagctcaggttctgattctcgcttaagactttgggatattgat
tcaggctgcaatactttggtcaattttgaagctatgcgattacagactagcaaaccgcta
caattagctgtcactgaggatccatcacttgtattcatcccatgcatggcaagcattaag
gcgtacaatttatggtctggtatgacatttcaaacattccgggggcactatgaacctgtt
aattgctgctactgtagtgcacaagaacaagagctttatactggcagcaatgacatgcaa
attcttgtgtggtcatcaactccagcgtttactgaaatgcctctgcaagaagatgatggc
aagaggcaaacggattttgtagtcgatgacgataactggagcgactga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (28)   
   Pfam (28)   
All databases (32)   

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