KEGG   Oryzias latipes (Japanese medaka): 101168193
Entry
101168193         CDS       T02443                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    101168193 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ola03400]
    101168193 (tdp1)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     101168193 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 101168193
NCBI-ProteinID: XP_023809425
Position
3:31358733..31368281
AA seq 643 aa
MIALNFVALFLLSSLCFHDIQLISCAEMSQDSQHGKWTISSSDDDDEEEDLPLSGTTTTQ
SRLPAESGVRSPSPVQVSAPVEVKVEPLSAAAPLTLGSEARRSAAKNQLNPVKCERSPSL
AGKRKSDASEGTGWALSDSDDDDKDVKDNSQSHLPKKAPPSPKTKKPKVKEERPPSPHGR
LYYIDEPEDFFESNIPCLNDTYRFYLNKVTGLDKKYNTGALHIRDILSPLFGTLKESVQF
NYCFDIPWMVQQYPPEFRDRPVLIVHGDKREAKARLLQQAQAFPHVRFCQAKLDIAFGTH
HTKMMLLWYEEGFRVIILTSNLIRADWYQKTQGMWMSPLFPRLPAGSGWSAGESPTFFKR
DLLDYLTSYRAPELEEWIQRIKEHDLSETRVYLVGSTPGRFVGPDMERWGHLRLRKLLYE
HTNPIPGEEKWPVIGQFSSIGSMGLDKTKWLAGEFQRTMTTLGKSSSRPDPPVLLLYPAV
EDVRMSLEGYPAGGSLPYSIQTAQKQLWLHGYFHRWKANATGRSHAMPHIKTYMRVSPDF
TELAWFLVTSANLSKAAWGALEKNNSQVMVRSYELGVLYVPSAFNLKTFPVDKSAFPVSS
SSSGFLVPFDLPPTPYAAKDQPWIWNIPYSQEPDTHGNIWIPS
NT seq 1932 nt   +upstreamnt  +downstreamnt
atgattgcgcttaattttgtagcgttatttttattatcttcgctttgttttcatgatatt
cagttgatctcttgtgcagagatgtctcaggacagtcaacatggcaagtggaccatctcc
agtagtgatgatgatgatgaggaggaagatcttcctctctctggaactacaacaacccag
tcccgtctgccagcggaatccggtgtcaggtccccctctccagtccaggtgtcagctcct
gtggaggtaaaagtagaaccactttctgcagcagctccactcacactgggttctgaagca
agacggtcggctgcaaagaaccagttaaatccggtgaagtgtgagcgaagcccctcgctg
gcgggaaagaggaagagcgatgcctcagagggcacaggctgggccctgtcggacagtgat
gacgatgacaaagatgtgaaggacaacagtcagagtcatttgccaaagaaagcacctccc
agccccaaaacaaagaaaccaaaagtgaaagaagagcgtccaccgagcccccatggacga
ctctactatatcgacgagccggaggacttctttgaatccaacattccctgtcttaatgac
acttacaggttctacctcaacaaagtcacaggcttggacaaaaagtacaacacgggggcg
ctgcacatcagggacattctctcccccttatttggaaccctgaaagagtcggttcagttt
aactactgctttgacattccatggatggttcagcaatacccaccggagtttcgagatcgt
ccggttctgatcgtacatggagataagagggaggcgaaagcacggcttctccagcaggct
caagcctttcctcatgttcgcttctgtcaggccaaactggacatcgcttttggaactcac
cacacgaagatgatgttgttgtggtacgaagaaggcttcagagtcatcatcctcacatca
aaccttatcagagccgactggtatcaaaagacacaggggatgtggatgagtcctctgttt
ccaaggctaccagcgggcagcggttggagtgcaggcgagtcgcccacctttttcaaaagg
gacctcctggactacctgacttcataccgggccccagaactggaggagtggatccagcgc
atcaaagagcacgacctgtcagagacgagggtgtatttggtcggctccactccagggagg
tttgtgggtccagacatggagcgctggggacatctaaggctgaggaagctgttgtacgag
cacacaaatccgattcccggcgaggaaaagtggcccgtgatcggtcagttttccagcatc
ggctcgatgggactggataaaaccaagtggttagcgggggagttccagcgcacaatgaca
actttagggaaatcctcctcacgccctgaccctcctgtgctgttgctctatccagctgtg
gaagatgtgagaatgagtctggaaggatatccagctggaggctctcttccttacagcatc
cagacggctcagaaacagctctggcttcacggctacttccatcgctggaaggcgaatgca
acagggagaagtcacgccatgcctcacatcaagacatacatgagggtttctccagatttc
acagagctcgcctggttcctcgtcacgagtgcaaacctttccaaagcagcgtggggtgcc
ttggagaagaacaactcccaggtgatggtgcgttcgtatgagctgggagtcctctatgtg
ccatcagcctttaacttgaagacattccccgttgataagagtgcattcccagtctcctcg
tcctcgtctgggttcctcgtgcctttcgacctcccacctacaccttatgctgctaaagat
caaccatggatctggaatattccatacagccaggagcccgacacccacggcaacatctgg
attccctcctga

  All links  
Gene (14)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system