KEGG   Oncorhynchus masou masou (cherry salmon): 135550247
Entry
135550247         CDS       T10723                                 
Name
(RefSeq) platelet-derived growth factor receptor beta-like isoform X1
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
omm  Oncorhynchus masou masou (cherry salmon)
Pathway
omm04010  MAPK signaling pathway
omm04020  Calcium signaling pathway
omm04510  Focal adhesion
omm04518  Integrin signaling
omm04519  Cadherin signaling
omm04540  Gap junction
omm04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:omm00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    135550247
   04020 Calcium signaling pathway
    135550247
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    135550247
   04519 Cadherin signaling
    135550247
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    135550247
   04540 Gap junction
    135550247
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    135550247
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:omm01001]
    135550247
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:omm04090]
    135550247
Enzymes [BR:omm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     135550247
Protein kinases [BR:omm01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   135550247
CD molecules [BR:omm04090]
 Proteins
  135550247
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase Ig_3 I-set ig VEGFR1-3_N_Ig-like Ig_2 V-set Ig_VEGFR-1-like_5th VEGFR-1-like_Ig-like C2-set_2 Haspin_kinase
Other DBs
NCBI-GeneID: 135550247
NCBI-ProteinID: XP_064836940
Position
12:complement(48823114..48847110)
AA seq 1104 aa
MWRGTLPRVLSIHTGTMELGLAKSLPLVAIFTVLLQFCPEGFSLELSPSEKEVILSTNSS
FTVVCSGWSKVTWKSPHDPSLEGVAVEDRGTTSVLVLHNVTWRHSGNYICEEPSTEEAKD
ISVFVPDPEEWFLPLQQAVVMKEGEEGTIPCVVTDPGINVTLYERASKARVEGTYHPSKG
FTAILKDSSYICRGAMNGEEKASQVYYVYSIVVPKSMNAFMTLSKTVLKQGEALMVNCTV
EEAEMVYFEWDFPRKETIEPLTDFLSEIRIRSFLNISSVTLKDSGQYICRVQDPFSGKSA
VDNLTVTVLERGFVDLEPSINTNVSALQYQSVALTVQIEAFPKPQVLWTRDNTTLTGETV
SIDTREVHETSYLSTLTLVRVRMEQRGPYTVHVANEDDVKEITFDLQVKSSPKIIDLSDQ
HIDQGHGVLCVTEGVPTPTVHWYSCESIGKCSNKTTAWKSLSADQENVSIQMNVSYIEAS
GVNQVRSLLTFQTMGGITSVRCEARSERGRRAWDIKLVSNSLFSQVAVLAAVLALVVIAV
IFLIILIALWRKKPRYEIRWKVIESVSSDGHKYTYMDPMHLPYDCVWEVPRDSLVLGHTL
GSGAFGRVVEATAYGLGHSQSTTKVAVKMLKSTARTSETQALISELKIMSHLGPHLNIVN
LLGACTKRGPIYLITEYCCYGDLVDYLHRNKHTFLQYYADKNRRDADMCRNSTESTVQIQ
GKSECDGGYMDMTKEDSLNYVPMQELSDNIKYADIEPSVNETPYHQDNNYQGQGQERADV
ALSISDSPILSYTDLVGFSYQVAKGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLA
RDVMNDSNYIAKGKTFLPLKWMAPESIFQNLYTTLSDVWSFGILLSEIFTLGGTPYPDIP
MNEQFYTALKRGYRMPKPAHATDEIYDIMCKCWDEKFKKRPLFSSLVNLTGNLLTDAYKK
KYTQVNESFLKSDHHAAIRSKPTPAGNPAVSSDDHSSGDRTGQETGEIEETGKEAGPSQT
DYIIAIPDIHVVEEAEAGGEVLDTATQSTSSPPSTTDQADTASLDGPETPLEEPVPTEEA
VLAPTQEDKLPQSPCTPEVEESFL
NT seq 3315 nt   +upstreamnt  +downstreamnt
atgtggagaggaactctcccaagagtgttatcaattcacactggcactatggagttgggc
ttggcaaagtctctgcctttggtggccatctttacagtgctgctgcagttttgtccagag
ggcttcagtctggagctcagccccagtgagaaggaggtcatactgagcaccaactcctcc
ttcacggtggtctgttctggttggagcaaggtgacctggaagtctccgcacgaccccagc
ctggagggagtggctgtggaggacaggggaaccaccagtgtgctggtcctccacaacgtc
acctggaggcactctgggaactatatctgtgaagagccctctacagaggaggccaaggac
atatcggtgtttgtaccagaccctgaggaatggtttcttcccctgcagcaagcagtggtg
atgaaggagggagaggaaggtaccattccctgcgtggtgactgaccctggcattaacgtg
accctgtacgagagggccagcaaggcccgtgtggagggaacataccaccccagtaaaggg
ttcaccgccattctgaaagacagctcctacatctgccgaggtgccatgaacggagaggag
aaggcgtcccaggtgtattatgtctacagtattgtggtccccaaatccatgaatgccttc
atgacactctcaaagacggtgctgaaacaaggcgaggccttaatggttaattgtactgta
gaagaagcagagatggtttacttcgaatgggattttcctcgtaaagagacaattgagcca
ctgacagactttctatcggagattagaatccgctccttcttgaacatctccagtgttact
ctgaaggactctggccagtacatctgccgagtgcaggaccctttttccggaaagtcagcc
gtggataatctcactgtcactgttctggaacggggctttgtggatttggaaccctccatc
aacaccaatgtttcagcgctgcagtatcagagcgttgcactcacagtgcagatcgaagcg
tttcccaaacctcaggtgctctggaccagagacaacaccacccttactggggaaactgta
tccattgacaccagagaggtgcatgagaccagttacctcagtactctgaccttggtaagg
gtccggatggaacagagggggccctacactgtccatgtggccaatgaagacgacgtcaag
gagataacctttgatcttcaagtcaagtcttccccgaagataatagatttgtctgaccag
cacatagaccagggccacggagtgctctgtgtcacagagggggtccccacacccaccgtc
cactggtacagctgtgaaagcattggaaaatgcagtaataagaccacagcatggaagtct
ctgtcggctgaccaagagaacgtcagcatccagatgaacgtcagctacatcgaggcctca
ggggtcaaccaagtccgcagccttttgaccttccagaccatggggggtattacatcagta
cgctgtgaagcccgcagcgagagagggcgcagggcctgggacatcaaactggtctcgaac
tctctgttctcccaggtggctgtcttggctgcagtgttagccctggtggtcattgccgtc
atcttcctcatcatcctcatcgccctttggagaaagaagccccggtatgagatccgttgg
aaggtgatcgagtcagtgagctcagatggccataagtacacctacatggaccccatgcac
ctgccatatgactgtgtatgggaggttccccgggatagcctggtcctgggtcacactctg
ggttctggagcatttgggagggtcgtggaggctacagcctatggccttggtcactctcag
tccaccaccaaagtggctgtgaagatgctcaagtccacagcaaggacaagtgagactcag
gctctgatatctgagctgaagataatgagtcaccttgggccccatctaaacattgtcaac
ctactgggggcttgtacgaaacgaggtcccatttacctcataactgagtactgttgctat
ggtgacctggttgactaccttcaccgcaacaagcataccttcctacagtactacgcagac
aaaaaccgcagggatgctgatatgtgcaggaacagcacagagagtacagtccaaatccaa
ggaaaaagtgagtgcgatgggggttacatggacatgaccaaggaagattctttaaattat
gtcccaatgcaagagctcagtgacaacatcaagtatgcagacatcgagccttcagtcaat
gagacaccctaccatcaggacaacaactaccaaggacaaggccaagagagagcagacgtc
gcgttgtctatcagtgactccccaattctgagctacacagatctggtgggctttagctac
caagtggctaagggcatggacttcctggcatccaagaattgtgttcatcgtgacctggct
gccagaaatgttctcatctgcgagggaaagctggtgaagatctgtgattttggcctggcc
cgtgatgtcatgaacgactccaactacatagccaaaggcaaaacattcctgccactgaag
tggatggctccagagagtatcttccagaacctctacacaaccttgagcgatgtttggtct
tttggcattctgctttcagagatctttactctaggaggaacgccctatcctgacattccc
atgaatgaacagttctacactgccttgaagagaggctacaggatgcctaaacctgctcat
gctacagacgagatctatgatatcatgtgcaagtgttgggatgagaaattcaagaagagg
ccactcttctcctctctggttaatttgacgggaaacctgctgactgatgcttacaaaaag
aaatacacccaggtgaatgagagctttctgaagagcgaccaccatgctgcaatcaggtcc
aaacctacaccagcagggaacccggctgtgtcttcagatgaccactcctcaggggatcga
acgggtcaggagacaggggagatagaggagactgggaaggaggctggcccctcccagact
gactacataatcgccatcccagatatccatgtagtcgaagaggcagaagcaggtggtgag
gtgctggacaccgccacacagagtacatcaagtcctccaagcacaaccgaccaggctgat
acagcctccctggatggaccagaaacacccctagaagaaccagtacccacagaggaagcg
gtgcttgctcccacgcaagaagacaagctcccccagtctccatgtacccctgaagtggag
gagagtttcctgtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (13)   
All databases (21)   

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