KEGG   Oncorhynchus mykiss (rainbow trout): 110488623
Entry
110488623         CDS       T07259                                 
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy04010  MAPK signaling pathway
omy04020  Calcium signaling pathway
omy04510  Focal adhesion
omy04518  Integrin signaling
omy04519  Cadherin signaling
omy04540  Gap junction
omy04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:omy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    110488623
   04020 Calcium signaling pathway
    110488623
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    110488623
   04519 Cadherin signaling
    110488623
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    110488623
   04540 Gap junction
    110488623
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    110488623
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:omy01001]
    110488623
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:omy04090]
    110488623
Enzymes [BR:omy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     110488623
Protein kinases [BR:omy01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   110488623
CD molecules [BR:omy04090]
 Proteins
  110488623
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase Ig_3 I-set VEGFR1-3_N_Ig-like Ig_2 ig Ig_VEGFR-1-like_5th V-set C2-set_2 RIFIN VEGFR-1-like_Ig-like Haspin_kinase
Other DBs
NCBI-GeneID: 110488623
NCBI-ProteinID: XP_021416581
Ensembl: ENSOMYG00000009566
UniProt: A0A8C7PCN2
Position
14:complement(6343720..6403186)
AA seq 1096 aa
MRSVRVGTLHLTTILTALLHFCPEFCCLEISPSNSEVVMTAGDSMIITCSGWGTVEWRFK
RDDNVPYFGVENQNTTSVLILDNVTWSQTGVYVCTEAWTDETIEVAVFVPDPDVWFIESF
HGMVTKTSEEGIIPCVVTNPQINVTLYERDSDMHLKGVYIPSEGYRAPLEDRTYVCRGEL
NGEEKESQAFYVFSIVVPETIDAYINASKTVLKQGEPLTVNCTVHGVELVFFSWDYPNRD
VDSIEPLTDVLSSQKMRSRLIVSKVTLANTGQYACHVHEGVQDQRATANVNITILEQGFV
ELRSVQDRNVSAQLHQNVELRVEIEAYPPPRVRWTKDDATVNGDNVVITKQEHETRYVST
LTLVRIRTEQKGLYTVHVANGDDTKKLTFDLEVKVPPQITDLSDHHLPGKRHAVTCVAEG
VPSPTIQWFSCDSLLKCSNRSTVWQPLVSDPETLSVQTNVSFNESRMVGQVRSQVIFHKP
QQVSVRCEASNERGLRRRDVKLVSSTFFSQVAVLAAVLALVVIVIISIIILIAVWRKKPR
YEIRWKVIESVSLDGHEYIYVDPIHLPYDLAWEMPRDSLVLGRTLGSGAFGRVVEATAYG
LSHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYLVT
EYCRYGDLVDYLHKNKHSFLQYYLEKNQEDSGCRISGGSTPLSQRKGYVSFGSECDGGYM
DMSKDEPTVYVPMQELKDTIKYADIQPSPYESPYQHDHYQEQDQITTDPALFISDSTTLS
YTDLIGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDSNYIS
KGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYSALKR
GYRMAKPNHATDEVYEVMQKCWDEKHEKRPEFSFLVHTMGNMLTDSYKKRYCQVNDEFFK
SDHPAVVRTKPRLSSPFLTPAITPSTAPDSLQDLNPYPLTGDFRPEADEEEVTTSYNDYI
IPIPDPKPQEEVFSEANRMPMESPASSLALEDDEADSISQETAEADTIPEEEDLHANQAL
IPLESSGTPEVEDSFL
NT seq 3291 nt   +upstreamnt  +downstreamnt
atgaggagtgtcagagtaggcactctccatctgacaaccattcttacagctcttttacac
ttctgtcctgagttctgttgcctggagatctcccctagcaacagtgaagtcgtcatgaca
gcgggtgactccatgatcattacctgttctggctgggggacggtcgaatggaggttcaag
cgggatgacaacgttccctattttggagtggagaaccagaacacaaccagtgttctcatt
ctggacaatgtgacgtggagccaaacgggagtatatgtctgtaccgaggcttggactgac
gagactatagaggtggcagtctttgttccggatcctgatgtgtggttcattgagagtttc
catggcatggtgaccaagaccagcgaggaggggatcatcccgtgtgtggtcaccaacccc
cagatcaacgtcaccctctacgaaagagacagtgacatgcacctgaagggggtctacatc
ccaagtgagggctacagggcgccactggaggacaggacctatgtgtgccgaggagagctg
aacggggaggagaaagagtcccaggctttctacgtattcagcattgttgttccagagacg
atcgacgcctacatcaatgcgtctaagacggtgctgaagcagggcgagcctctgaccgtg
aactgcacggtgcacggagtggagctggtcttcttctcctgggactatcccaatagagac
gtggactccattgagcctctgactgacgtcctgtcatcccagaagatgcgctcacgcctc
atagtctccaaggtgacgctggccaacacgggccagtatgcgtgtcatgtccacgagggt
gtccaggaccagagagccacagccaacgtcaacatcaccatccttgagcaaggctttgtg
gagctgaggtccgtccaggatcgtaatgtctcggcccagctgcaccagaacgtagagctg
agggtggagattgaagcttacccccctccacgtgtccgctggaccaaagatgatgccacg
gtcaacggggacaacgtcgtaatcaccaagcaggagcatgagaccaggtacgtcagcacg
ttgaccctggtgaggatcaggacagaacagaaaggcctctacaccgttcacgtcgccaac
ggcgatgacaccaagaaattgacctttgatctagaggtcaaagtcccccctcagatcaca
gacctgtcggaccaccacctccctgggaagaggcatgcagtgacctgtgtggctgagggg
gtaccttcccccaccatccagtggttcagctgtgacagcttgctcaagtgcagtaaccgg
agcacagtgtggcagcccctagtgtcagaccctgagaccctgagcgtccagaccaacgtc
agcttcaacgagagccgtatggtgggccaggtccgcagccaggtcatcttccacaagccc
cagcaggtgagcgtccgctgcgaggccagcaacgagagaggactccgcaggagggacgtc
aaactggtgtccagcacttttttctcccaggtggcagtgttggctgcggttctagccctg
gtagtcatcgtcatcatctccatcatcatcctcatcgctgtgtggaggaagaagcctcgc
tatgagatcaggtggaaggtgatcgagtcagtgagtctggacggacatgagtacatctat
gttgaccccatccatctgccctatgaccttgcctgggagatgccccgagacagcctggtg
ctgggtcgcactcttgggtccggagcattcggcagggtggtcgaagcgaccgcgtatggt
ctcagtcattcccagtccagcacgaaagtggcagtgaaaatgctcaaatccacggccagg
aggagtgagacccaggctctaatgtcagagctgaagatcatgagccacctggggcctcac
ctcaacattgtcaacctgctgggggcctgcaccaaacagggccctctctacctggtgaca
gagtactgtcgctatggagacctggtggactacttacacaagaacaagcactcgttcctg
cagtactaccttgagaagaaccaggaggactctggctgccgcatctctggagggagcacc
cctctcagccaaaggaaaggctacgtgtcatttggcagtgagtgtgacggtggttacatg
gacatgagtaaggacgagcccacagtgtacgtccccatgcaggagctgaaagacaccatc
aaatacgctgacatccagccttctccctatgagtctccctatcagcacgaccattaccag
gaacaagaccagatcacaacggaccctgccctgttcatcagtgactctactacacttagc
tatactgacctcatcggcttcagctaccaggtggccaaaggcatggagttcctcgcctcc
aagaattgtgtccatcgtgacctggccgccaggaacgtgttgatctgtgaggggaaactg
gtgaagatctgtgactttggcctagccagagacatcatgcacgattccaactacatctcc
aaaggcagcacattcctgcccctgaagtggatggccccagagagtatcttccataacctg
tacaccaccctgagtgacgtgtggtcctatggcatcttgctctgggagatcttcaccctt
ggaggaaccccttaccctgaccttcctatgaatgagctgttttacagtgccttaaagaga
ggctatcgcatggccaaacctaaccacgccacagacgaagtttatgaagtgatgcagaag
tgctgggatgagaagcatgagaagaggccagagttctcctttctggtgcacaccatgggg
aacatgctcactgacagctataaaaagagatactgccaagtcaacgacgagttcttcaag
agtgaccacccggccgtggtcagaaccaaacccaggctctcctcccccttcctcacccca
gccatcaccccctccaccgcccctgactccctccaggatctcaacccctaccccctaact
ggagactttagaccggaggcagatgaagaggaagtgactacctcctacaatgactacatc
attcccatcccggaccccaagcctcaggaggaagtcttctccgaggccaaccgcatgcca
atggaaagccccgcgagctctctggctctggaggatgacgaggctgattccatctcccag
gagacagccgaggcagacaccattccagaagaggaggatctccatgccaaccaggctctg
attccactggaatcttctggaacaccggaagtggaagacagcttcctgtag

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (14)   
   Pfam (14)   
All databases (26)   

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