KEGG   Oncorhynchus mykiss (rainbow trout): 110504831
Entry
110504831         CDS       T07259                                 
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy04010  MAPK signaling pathway
omy04020  Calcium signaling pathway
omy04510  Focal adhesion
omy04518  Integrin signaling
omy04519  Cadherin signaling
omy04540  Gap junction
omy04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:omy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    110504831
   04020 Calcium signaling pathway
    110504831
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    110504831
   04519 Cadherin signaling
    110504831
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    110504831
   04540 Gap junction
    110504831
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    110504831
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:omy01001]
    110504831
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:omy04090]
    110504831
Enzymes [BR:omy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     110504831
Protein kinases [BR:omy01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   110504831
CD molecules [BR:omy04090]
 Proteins
  110504831
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase Ig_3 I-set Ig_2 VEGFR1-3_N_Ig-like ig V-set Ig_VEGFR-1-like_5th Psg1 VEGFR-1-like_Ig-like Haspin_kinase DUF4715
Other DBs
NCBI-GeneID: 110504831
NCBI-ProteinID: XP_021439342
Ensembl: ENSOMYG00000026317
UniProt: A0A8C7RQM8
Position
31:complement(25244860..25283206)
AA seq 1094 aa
MRSVRVSTLHLTALLTALLHFCPEYRCVEISPSNSEVVMTPGDSMIFTCSSWGTVGWRFK
RNDDIPYFGVENQNTTSVLILDNVTWRHTGVYVCAEALTDEAREVAVFVPDPEVWFIESS
HGMVTKTSEEGTIPCVVTNPHINVTLYETDSDMHLKGVYIPSEGYRASLEDRTYVCRGEL
NGEEKESQEFYVLSIVVPETIDAYINASKTVLKQGEPLTVNCTVHGVELVFFSWDYPNRD
VDFIEPLTDILSSQSMRSCLAVSKATLANTGQYVCHVHESVQDQRATANVNITVLERGFV
ELRSVQERNVSAQLHQNVELRVEIESYPAPRVRWTKDNATVNGDNTVITRQEHETRYVSI
LTLVRIRTEQKGLYTVLVANGDDTKEVTFDLEVKVPPQITDLSDHHLPGKRHAVTCVAEG
VPSPSIQFFSCDSMLKCSNRSTVWQPLVSDPETLSIQTNISFNESRKVGQVRSQVTFHKP
QQVTVRCEASNEGGVRRRDVKLVSSTLFSQVAVLAAVLPLVVILITSIIILIAVWRKKPR
YEIRWKVIESVSLDGHEYIYVDPIHLPYDLAWEMARDSLVLGRTLGSGAFGRVVEATAYG
LSHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYLVT
EYCRYGDLVDYLHRNKHTFLQYYAEKNQEDSGCRVSGGSTPLSQRKGYVSFGSEFDGGYM
DMSKDEPTVYVPMQELKDTIKYTDIQPSPYESPYQHHLYQEQDQTTVDSALVISDCPTLS
YSDLIGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDSNYVS
KGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGAPYPDLPMNELFYGALKR
GYRMAKPNHATDEVYEVMQKCWDEKYERRPEFSFLVHTMGNMLTDSYKKRYCQVNDEFFK
RDHPAVVRTKPRLSSHFPTPALTPSTAPATPQDTNPYPLTGDFRPEADGEEASYNDYIIP
IPDPKPEEEVCSEANDMPTKSLASSRALEDEEADSISQETVEADTIPEDKYLHANQALIP
LESSGTPEAEDSFL
NT seq 3285 nt   +upstreamnt  +downstreamnt
atgaggagtgtcagagtgtccactctccatctgacagccctactaacagctcttttgcac
ttctgccctgagtaccgttgcgtggagatctcccctagcaacagcgaggtcgtcatgaca
ccgggcgactccatgatcttcacctgttctagctgggggacagtcggatggaggttcaag
cggaatgacgacattccctattttggagtggagaaccagaacacaaccagtgttctcatt
ctggacaacgtgacgtggagacacacaggagtgtacgtctgtgccgaggctttgacggac
gaggctagagaggtggcagtctttgtgccggaccctgaagtgtggttcattgagagctcc
cacggcatggtgaccaagaccagcgaggaggggaccatcccctgtgtggtcaccaacccc
cacatcaacgtcaccctctacgagacggacagtgacatgcacctaaagggggtctacatc
cccagtgagggctacagggcatccctggaggacaggacctatgtgtgtcgtggggagctg
aacggagaggagaaagagtcccaggaattctacgtcttaagtatagttgtcccggagaca
atcgacgcctacatcaatgcgtctaagacggtgctgaagcagggcgagcctctgacagtg
aactgcacggtgcacggagtggagctggtcttcttctcctgggactaccccaacagagac
gtggacttcatcgagccattgacagacatcctgtcgtcccagagcatgcgctcctgcctc
gccgtctctaaggcgacgctggccaacacagggcagtacgtgtgtcacgttcacgagagt
gtccaggaccagagggccaccgccaacgtcaacatcaccgtcctcgagcgaggcttcgtg
gagctgaggtctgtccaggagcgtaacgtctcggcccagctgcaccagaacgtagagctg
agggttgagatcgagtcctaccccgctccacgtgtccgctggaccaaagacaacgccacc
gtcaacggagacaacaccgtcatcaccaggcaggagcacgagaccaggtacgtcagcata
ttgaccttggtgaggatcaggacggaacagaagggactttacactgttctcgtcgccaac
ggagacgacaccaaggaagtgacatttgatctggaggtcaaagttccccctcagataaca
gacctgtcggaccaccacctcccagggaagaggcatgcagtgacctgtgtggccgagggg
gtcccctccccctccatacagtttttcagctgtgacagcatgctcaagtgcagtaaccgg
agcacagtgtggcagcccctggtgtcagaccctgagaccctgagtatccagaccaacatt
agtttcaatgagagccgtaaggtgggccaggtccgcagccaggtcaccttccacaagccc
caacaggtgaccgtccgctgtgaggccagcaacgagggaggagtccgcaggagagacgtc
aaactggtgtccagcactctgttctcccaggtggcagtgttggctgcggttctacccctg
gtggtcatcctcatcacctccatcatcatcctcatcgctgtgtggaggaagaagcctcgc
tatgagattagatggaaggtgatagagtcagtgagtctggatggccatgagtacatctac
gtcgaccccatccacctgccctacgacctggcctgggagatggctcgagacagcctggtg
ctgggtcgtactcttgggtccggggcgtttggcagggtggtcgaggcgactgcctatggt
ctcagtcattcccagtccagcacaaaggtggcagtaaaaatgctcaaatccacagccagg
aggagtgagacccaggctctgatgtcagagctgaagatcatgagccacctggggcctcac
ctcaacatcgtcaacctgctgggagcttgcaccaaacagggtcctctctacctggtgacg
gagtactgtcgctatggagacctggtggactacttacacaggaacaagcacacgtttctg
cagtactacgctgagaagaaccaggaggactctggttgccgcgtctctggagggagcacc
cctctcagccagaggaaaggctacgtgtcgtttggcagtgagtttgatggtggctacatg
gacatgagtaaggacgagcccacggtgtacgtccccatgcaggaacttaaagacaccatc
aaatacactgacatccaaccttctccatatgagtcgccataccagcaccacctttaccag
gaacaagaccagaccacagtggacagtgccctggtcatcagtgactgccctaccctcagc
tattctgacctcattggcttcagctaccaggtggccaagggcatggagttccttgcctcc
aagaactgtgtccatcgtgatctggccgccaggaacgtgttgatctgtgaggggaagctg
gtgaagatctgtgactttggtctggccagagacatcatgcacgactccaactacgtctcc
aaaggcagcacgttccttcctcttaagtggatggccccagagagtattttccataacctg
tacaccaccctgagtgacgtgtggtcctatggcatcctgctctgggagatcttcaccctg
ggaggagccccctaccctgatctgcccatgaatgagctgttctacggtgccttaaagaga
ggatatcgcatggccaaacctaaccacgccaccgatgaagtttatgaagtcatgcagaag
tgctgggatgagaagtacgagagaaggccagagttctcttttctggtgcacacaatgggg
aacatgctcacagacagctataaaaagagatactgccaggtcaacgatgagttcttcaag
cgtgaccacccagccgtggtccgcaccaaacccaggctctcctctcacttccccactccg
gccctaaccccgtccaccgcccctgccaccccccaggacacaaacccctaccccctaact
ggggacttcagacccgaggcagatggtgaggaagcttcctacaacgactacatcatcccc
atcccagatcccaagcctgaggaggaagtctgctccgaggctaacgacatgccaacgaaa
agcctcgcaagttctcgggctctggaggacgaggaggctgattccatctcccaggagaca
gtggaggcagacaccattccagaggataaatatctccatgccaaccaggccctgattcca
ctggagtcctctggaacaccggaagcggaagacagcttcctgtaa

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (14)   
   Pfam (14)   
All databases (26)   

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