KEGG   Oncorhynchus nerka (sockeye salmon): 115107519
Entry
115107519         CDS       T07952                                 
Name
(RefSeq) poly(A) polymerase type 3-like isoform X1
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    115107519
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:one03019]
    115107519
Enzymes [BR:one01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     115107519
Messenger RNA biogenesis [BR:one03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     115107519
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 MTPAP-like_central DUF6431 RMD6
Other DBs
NCBI-GeneID: 115107519
NCBI-ProteinID: XP_029486757
Position
LG24:714898..736778
AA seq 730 aa
MPFPSTNQVLLGRETPKHYGITSPISLAQAKEADLVLTHRLTEALKPYGVFEEELELQRR
IHVLGKLNTLVKEWIRDVSETKNLPASVIETVGGKIFTFGSYRLGVHTKGADIDALCVAP
RHVERTDFFSSFLDKLKEQEEVKDLRAVEEAFVPVIKLSFDSIEIDILFARLALQTIPEN
LDLRDDGLLKNLDIRCIRSLNGCRVTDEILHLVPNIENFRLTLRTIKLWAKRHNIYSNIL
GFLGGVSWAMLVARTCQLYPNAVASTLVHKFFLVFSKWEWPNPVLLKQPEDCNMNLPVWD
PRVMLIIMLNLPVWDPRVTPSDRYHLMPIITPAYPQQNSTYNVSASTRAVMVDEFKQGLA
ITDEILQSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGNLE
KNEFITLAHVNPQSFPGPKESREKEEVSTMWVIGVIFKKMEASENLNVDLTIDIQSFTDT
VYRQAMNSKMFEADMKIQAMHVKRRQLHQLLPDLVMPKRRKHSTEGLRQMNDSSLDLSLD
SDNSMSVPSPTAMPATVPTSTPVKCGPLGPPPSPLAAAAGQPEAPAVKRPGSPMQEERKR
FKSDAEDSAVEKKPSGDTVPTSLTPSPPPTMGPPAAPRTSRQEMLEEEDPSPVPETRTTE
NGAAAGEECTTVEAQVNEDSMSEEMPASEGEGKMEADIKRMVSADLSDVPLLPANPIPVV
KNSIKLRLSR
NT seq 2193 nt   +upstreamnt  +downstreamnt
atgccctttccgtctacaaaccaggtgttgttgggtcgggaaacacccaagcactatggg
atcacttctcctatcagcctggcccaagccaaggaggctgacctggtcctcacacacagg
ctgactgaggccctgaaaccatacggggtgtttgaagaggagctggaactacagcgcaga
atacatgtgttgggaaaactgaacacactggtgaaggaatggatccgtgacgtcagtgag
acaaagaatctgcctgcctcagtgattgaaacggttggagggaagatcttcacatttggg
tcctacaggttaggagtccacactaaaggtgctgacattgatgccctgtgtgtggctcct
cggcatgtggagagaacagacttcttctcctcgttcctggacaagctgaaggagcaggag
gaggtcaaagatttgagggctgttgaggaggcatttgtccccgtgataaagctgtctttc
gacagcattgagatcgatatcttgtttgctcggttagcgttgcaaaccatcccagagaat
ctggacctccgagatgacgggctgctgaagaaccttgacatccgctgcattaggagtctc
aatggttgtagagttacagatgaaatcctccatcttgtgcccaacattgagaacttcaga
ctgacactgaggaccatcaagctgtgggctaaacgtcataacatctacagtaatatcctg
ggcttcctgggtggtgtctcctgggccatgctggtagccaggacctgccagctctacccc
aacgccgtggcctccaccctcgtacacaagttcttcctcgtcttctccaaatgggaatgg
cccaaccctgttctcctgaagcagccagaggactgcaacatgaacctgccagtctgggac
cccagggtaatgctgatcataatgttgaacctgccagtctgggaccccagggtgaccccc
agtgaccggtaccacctgatgcccatcatcacaccagcctaccctcagcagaactctacc
tacaacgtctctgcctctacgcgtgccgtcatggtggacgagttcaaacagggtctggcc
atcacagatgaaattttgcagagtaaagcagagtggtccaaactatttgaagcaccaaac
ttctttcagaaatacaagcattatattgtgttgctagcaagcgcccccaccgagaagcag
cacctggagtgggttggtctggttgagtctaagatcaggatcttagtaggaaacctggag
aagaatgagttcataacgttggcccatgtcaacccccagtcattccctggacccaaggaa
agcagggagaaagaggaggtcagcaccatgtgggtgataggggttatctttaagaagatg
gaggcatcagagaacctcaacgttgacctgaccattgacatccagtcctttactgacacg
gtgtaccggcaggcgatgaacagcaagatgtttgaggcggacatgaagatccaggccatg
catgtgaagaggagacaacttcaccagctactgcctgacctggtcatgcccaaacgcagg
aagcactcgacagaggggcttcgtcagatgaatgacagcagtctggacctatcgttagac
agtgacaacagtatgtctgtgccatcccccacggccatgccagccactgtacccacgtca
accccagtgaagtgtggcccactaggtccccctccaagtccccttgcggctgcagccggc
cagcctgaggccccagctgtgaagagacctggctcccctatgcaggaagagaggaagcgg
ttcaaatcagatgctgaggattcagctgttgagaaaaagccttcaggagacacagtcccc
acaagcctgaccccctctcctccgcccaccatgggccccccagcggccccccgcacctct
cgccaggagatgctggaggaggaggacccctccccagtcccagagactaggacaacagag
aatggggcagctgccggagaggagtgcaccactgtggaggcacaggtcaatgaggacagt
atgtccgaggagatgcctgcttctgaaggggaaggcaagatggaggcagatattaagcga
atggtcagtgcggatctgtctgatgtgcccctcctgccagccaacccaattccagtggtg
aagaactctataaagcttcgcctcagcaggtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (11)   

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