KEGG   Ottowia testudinis: J1M35_15685
Entry
J1M35_15685       CDS       T08188                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
otd  Ottowia testudinis
Pathway
otd02024  Quorum sensing
otd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:otd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J1M35_15685 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    J1M35_15685 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otd03019]
    J1M35_15685 (hfq)
   03036 Chromosome and associated proteins [BR:otd03036]
    J1M35_15685 (hfq)
Messenger RNA biogenesis [BR:otd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     J1M35_15685 (hfq)
Chromosome and associated proteins [BR:otd03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    J1M35_15685 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QTD44522
UniProt: A0A975H528
Position
complement(3317415..3317669)
AA seq 84 aa
MSNKGQLLQDPFLNTLRREHIPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAI
STIVPGRAVNFSSGGADPQDSEEK
NT seq 255 nt   +upstreamnt  +downstreamnt
gtgagcaacaaagggcaactcctacaagacccgttcctgaacaccctgcgccgcgagcac
attccggtgtccatttatttggtcaacggcatcaagctgcaaggtcagatcgaatcgttt
gaccaatacgtcgtgttgctgcgcaacacggtgacgcaaatggtctacaagcatgccatc
tcgaccatcgtgccggggcgtgccgttaacttctcgagtggcggcgccgatcctcaggac
tctgaagaaaaataa

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